Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4597 187 8e-45 seq834 170 7e-40 seq3242 95.1 4e-17 seq11196 93.3 1e-16 seq13076 80.6 9e-13 >seq4597 Length=187609 Score = 187 bits (206), Expect = 8e-45 Identities = 341/496 (69%), Gaps = 39/496 (8%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 15341 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 15399 Query 136 GGCACTGTCCC---CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || || |||||| |||| | || Sbjct 15400 CGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 15459 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 15460 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 15504 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 15505 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 15564 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 15565 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 15624 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 15625 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 15684 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCG 488 |||||||||||||||| |||| |||||| ||||||||||| |||| ||| ||| | Sbjct 15685 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAG 15744 Query 489 CCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGT 548 | | | | ||| | |||| || || ||||||||||||||||| || Sbjct 15745 CTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCGGGCAGGTGT 15788 Query 549 CAGTCCGTATACCTCG 564 ||| | ||||| ||| Sbjct 15789 CAGACTCTATACATCG 15804 >seq834 Length=261106 Score = 170 bits (188), Expect = 7e-40 Identities = 290/415 (70%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 94979 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 94921 Query 136 GGCACTGTCCCCAACCCA---GA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAG 189 ||| ||||||| ||| || || || || | |||||| |||| | || Sbjct 94920 CGCAGTGTCCCCCCCCCCCCCGAATTCTCGGTGCGACGGTTAGGCATCCTTAGACGAAAG 94861 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||| | Sbjct 94860 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACTT 94816 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 94815 ATCCTACACATTCAATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 94756 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | | || || || | | ||||||||||||| | || Sbjct 94755 ACCGTCTAGCCGTTGGTACTCCGTATTTTCACGGAGAATTCAATTTCACCGGGTCCATGT 94696 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| |||| |||| ||||| |||||||||| ||||| ||||||||| Sbjct 94695 CGGAGACAGCGGGGCAGTCATTACACCATTTGTGCAGGTCGCTACTTATGTGACAAGGAA 94636 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||||| |||| |||||| |||||||||||||||| ||| ||| Sbjct 94635 TTTCGCTACCTTAGGATAGTTAGAGTTACTGCCGCCGTTTACTGGGGTTTCCATT 94581 >seq3242 Length=139294 Score = 95.1 bits (104), Expect = 4e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| ||| |||| |||| ||||||||| |||||||||||||||||| Sbjct 17188 TCGTTACGCC-TTCATGCGGGTCAAAACTAACCCGACAAATAATTTCGCTACCTTAGGAC 17130 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| || | ||||||||||| ||| Sbjct 17129 CATTATAGTTACGGCCACTGTTTACTGGGGTTTC 17096 >seq11196 Length=45469 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || ||||||| ||| || ||| ||||||||||||||||||||| |||||||||||| Sbjct 11013 TCATTACGCCTTTCATGTGAATCGAAACTTACCCGACAAGGAATTTTGCTACCTTAGGAC 10954 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| | ||||| || |||||||| Sbjct 10953 CGTTATAGTTACGGTCTCCGTTCACCGGGGCTTC 10920 >seq13076 Length=29684 Score = 80.6 bits (88), Expect = 9e-13 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| || |||||| ||||| ||||||||||||| || |||| || ||||| | Sbjct 6700 TCGTTACACCTTTCGTGTGGGTCGAAACTTACCCGACATAGATTTTCATTATCTTAGAAC 6641 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||| |||| || ||||||| Sbjct 6640 CGTTATAGTTACGACCGTCGTTCAC-CGGGCTTC 6608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701080844288