Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq4597 187 8e-45
seq834 170 7e-40
seq3242 95.1 4e-17
seq11196 93.3 1e-16
seq13076 80.6 9e-13
>seq4597
Length=187609
Score = 187 bits (206), Expect = 8e-45
Identities = 341/496 (69%), Gaps = 39/496 (8%)
Strand=Plus/Plus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 15341 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 15399
Query 136 GGCACTGTCCC---CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAG 189
||| |||||| | ||| || || || || |||||| |||| | ||
Sbjct 15400 CGCAGTGTCCCGCCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 15459
Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249
|||||| ||||| | | || | | ||| | || | ||||||||
Sbjct 15460 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 15504
Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308
|||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 15505 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 15564
Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 15565 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 15624
Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428
|||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 15625 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 15684
Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCG 488
|||||||||||||||| |||| |||||| ||||||||||| |||| ||| ||| |
Sbjct 15685 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAG 15744
Query 489 CCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGT 548
| | | | ||| | |||| || || ||||||||||||||||| ||
Sbjct 15745 CTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCGGGCAGGTGT 15788
Query 549 CAGTCCGTATACCTCG 564
||| | ||||| |||
Sbjct 15789 CAGACTCTATACATCG 15804
>seq834
Length=261106
Score = 170 bits (188), Expect = 7e-40
Identities = 290/415 (70%), Gaps = 23/415 (6%)
Strand=Plus/Minus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 94979 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 94921
Query 136 GGCACTGTCCCCAACCCA---GA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAG 189
||| ||||||| ||| || || || || | |||||| |||| | ||
Sbjct 94920 CGCAGTGTCCCCCCCCCCCCCGAATTCTCGGTGCGACGGTTAGGCATCCTTAGACGAAAG 94861
Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249
|||||| ||||| | | || | | ||| | || | |||||| |
Sbjct 94860 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACTT 94816
Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308
|||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 94815 ATCCTACACATTCAATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 94756
Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368
|||| |||| | | | || || || | | ||||||||||||| | ||
Sbjct 94755 ACCGTCTAGCCGTTGGTACTCCGTATTTTCACGGAGAATTCAATTTCACCGGGTCCATGT 94696
Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428
|||||||| ||| |||| |||| ||||| |||||||||| ||||| |||||||||
Sbjct 94695 CGGAGACAGCGGGGCAGTCATTACACCATTTGTGCAGGTCGCTACTTATGTGACAAGGAA 94636
Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
||||||||||||||||| |||| |||||| |||||||||||||||| ||| |||
Sbjct 94635 TTTCGCTACCTTAGGATAGTTAGAGTTACTGCCGCCGTTTACTGGGGTTTCCATT 94581
>seq3242
Length=139294
Score = 95.1 bits (104), Expect = 4e-17
Identities = 78/94 (83%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||| ||| |||| |||| ||||||||| ||||||||||||||||||
Sbjct 17188 TCGTTACGCC-TTCATGCGGGTCAAAACTAACCCGACAAATAATTTCGCTACCTTAGGAC 17130
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
|||||||||| || | ||||||||||| |||
Sbjct 17129 CATTATAGTTACGGCCACTGTTTACTGGGGTTTC 17096
>seq11196
Length=45469
Score = 93.3 bits (102), Expect = 1e-16
Identities = 77/94 (82%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|| ||||||| ||| || ||| ||||||||||||||||||||| ||||||||||||
Sbjct 11013 TCATTACGCCTTTCATGTGAATCGAAACTTACCCGACAAGGAATTTTGCTACCTTAGGAC 10954
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||| | ||||| || ||||||||
Sbjct 10953 CGTTATAGTTACGGTCTCCGTTCACCGGGGCTTC 10920
>seq13076
Length=29684
Score = 80.6 bits (88), Expect = 9e-13
Identities = 75/94 (80%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
||||||| || |||||| ||||| ||||||||||||| || |||| || ||||| |
Sbjct 6700 TCGTTACACCTTTCGTGTGGGTCGAAACTTACCCGACATAGATTTTCATTATCTTAGAAC 6641
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||| |||| |||| || |||||||
Sbjct 6640 CGTTATAGTTACGACCGTCGTTCAC-CGGGCTTC 6608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1701080844288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |