Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq11912 116 8e-24 seq10548 93.3 9e-17 seq10820 87.8 4e-15 seq7280 87.8 4e-15 seq2344 84.2 5e-14 seq17499 82.4 2e-13 seq6535 77.0 7e-12 >seq11912 Length=37563 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 34632 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 34691 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 34692 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 34751 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 34752 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 34811 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 34812 GCAGGCTCATCAAACAGCG 34830 >seq10548 Length=46761 Score = 93.3 bits (102), Expect = 9e-17 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 20936 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 20994 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||| ||||||||| ||||||||||| ||| ||| || Sbjct 20995 TCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCATAGGAGTTTGGGTCGTCTCTTAG 21054 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | | | ||||| || | ||||||| || Sbjct 21055 TCCAAGTGTGGTTGATCATCCTCTCGGA 21082 >seq10820 Length=75845 Score = 87.8 bits (96), Expect = 4e-15 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||||||| | | ||| || || || || ||||| || || || ||| || | Sbjct 68922 AAAGAAGTTCATGACCCGC-GAGCCATCTATCTCCACGCGACATG-CTCCGTCAAGCTTT 68979 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 | |||||| || |||||||| || |||||||||||||||| |||| ||||||||||| Sbjct 68980 CACCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGAGTCTGGATCGTGTCTCAGT 69039 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||||| || | ||||||| || Sbjct 69040 CCCAGTGTGGCTGATCATCCTCTCGGA 69066 >seq7280 Length=76597 Score = 87.8 bits (96), Expect = 4e-15 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||| ||||| || | | || || | || ||| ||| | || | ||| |||| || Sbjct 49608 AAAATAAGTTCACGACCAGTGGACC--TCTACCTCCACACGACATTGCTCTGTCAGGCTT 49665 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||| | ||||||||||| ||| |||||||| Sbjct 49666 TCGCCCATTGCGAAAAATTCCCCACTGCTGGCCCCCGTAGGAGTCTGG--GTTGTCTCAG 49723 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 ||||||||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 49724 TTCCAATGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATT 49783 Query 261 ACCCCGCCTACTACCTAAT 279 || | | |||| ||||| Sbjct 49784 GCCTCACTAACTAGCTAAT 49802 >seq2344 Length=172810 Score = 84.2 bits (92), Expect = 5e-14 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| || | ||| |||| || Sbjct 24983 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGACATTGCTCCGTCAGGCTT 25041 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196 ||||| |||| || ||||| |||| ||||||||||||||||| ||| |||||| Sbjct 25042 TCGTCTATTGTGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGTCGTGTC 25097 >seq17499 Length=11481 Score = 82.4 bits (90), Expect = 2e-13 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||||||| | | || | || ||||| || || | || | ||| |||| || | Sbjct 7197 AAAGAAGTTCATGACCCAT-GAGCCTTCTATCTCCATGAGACATTGCTCCGTCAGGCTTT 7139 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| || |||||||| || |||||||||||||| | ||| |||||||| ||| Sbjct 7138 CGCCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGATTCTGGGCCGTGTCTTAGT 7079 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||||| | | ||||||| || Sbjct 7078 CCCAGTGTGGCTAATCATCCTCTCGGA 7052 >seq6535 Length=80559 Score = 77.0 bits (84), Expect = 7e-12 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||| | || | ||| |||| || ||| |||||| || ||||| |||| |||| Sbjct 14022 CCTCCACACGACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGC 13963 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||| ||||||||||| ||| ||| ||| | | ||||| || | ||||||| || Sbjct 13962 CTCCCATAGGAGTTTGGGTCGTCTCTTAGTCCAAGTGTGGTTGATCATCCTCTCGGA 13906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067971808256