Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq11912 116 8e-24
seq10548 93.3 9e-17
seq10820 87.8 4e-15
seq7280 87.8 4e-15
seq2344 84.2 5e-14
seq17499 82.4 2e-13
seq6535 77.0 7e-12
>seq11912
Length=37563
Score = 116 bits (128), Expect = 8e-24
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 34632 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 34691
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 34692 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 34751
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 34752 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 34811
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 34812 GCAGGCTCATCAAACAGCG 34830
>seq10548
Length=46761
Score = 93.3 bits (102), Expect = 9e-17
Identities = 110/148 (74%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| ||
Sbjct 20936 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 20994
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||| ||||||||| ||||||||||| ||| ||| ||
Sbjct 20995 TCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCATAGGAGTTTGGGTCGTCTCTTAG 21054
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228
| | | ||||| || | ||||||| ||
Sbjct 21055 TCCAAGTGTGGTTGATCATCCTCTCGGA 21082
>seq10820
Length=75845
Score = 87.8 bits (96), Expect = 4e-15
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
||||||||| | | ||| || || || || ||||| || || || ||| || |
Sbjct 68922 AAAGAAGTTCATGACCCGC-GAGCCATCTATCTCCACGCGACATG-CTCCGTCAAGCTTT 68979
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
| |||||| || |||||||| || |||||||||||||||| |||| |||||||||||
Sbjct 68980 CACCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGAGTCTGGATCGTGTCTCAGT 69039
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGA 228
||| ||||| || | ||||||| ||
Sbjct 69040 CCCAGTGTGGCTGATCATCCTCTCGGA 69066
>seq7280
Length=76597
Score = 87.8 bits (96), Expect = 4e-15
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||| ||||| || | | || || | || ||| ||| | || | ||| |||| ||
Sbjct 49608 AAAATAAGTTCACGACCAGTGGACC--TCTACCTCCACACGACATTGCTCTGTCAGGCTT 49665
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||| | ||||||||||| ||| ||||||||
Sbjct 49666 TCGCCCATTGCGAAAAATTCCCCACTGCTGGCCCCCGTAGGAGTCTGG--GTTGTCTCAG 49723
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
||||||||||| || | ||||||| || | ||| ||| | | || ||| || ||
Sbjct 49724 TTCCAATGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATT 49783
Query 261 ACCCCGCCTACTACCTAAT 279
|| | | |||| |||||
Sbjct 49784 GCCTCACTAACTAGCTAAT 49802
>seq2344
Length=172810
Score = 84.2 bits (92), Expect = 5e-14
Identities = 89/116 (77%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||| | ||||| ||| ||||| || | ||| |||| ||
Sbjct 24983 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGACATTGCTCCGTCAGGCTT 25041
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196
||||| |||| || ||||| |||| ||||||||||||||||| ||| ||||||
Sbjct 25042 TCGTCTATTGTGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGTCGTGTC 25097
>seq17499
Length=11481
Score = 82.4 bits (90), Expect = 2e-13
Identities = 107/147 (73%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
||||||||| | | || | || ||||| || || | || | ||| |||| || |
Sbjct 7197 AAAGAAGTTCATGACCCAT-GAGCCTTCTATCTCCATGAGACATTGCTCCGTCAGGCTTT 7139
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| || |||||||| || |||||||||||||| | ||| |||||||| |||
Sbjct 7138 CGCCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGATTCTGGGCCGTGTCTTAGT 7079
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGA 228
||| ||||| | | ||||||| ||
Sbjct 7078 CCCAGTGTGGCTAATCATCCTCTCGGA 7052
>seq6535
Length=80559
Score = 77.0 bits (84), Expect = 7e-12
Identities = 87/117 (74%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171
||| ||| | || | ||| |||| || ||| |||||| || ||||| |||| ||||
Sbjct 14022 CCTCCACACGACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGC 13963
Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
||||| ||||||||||| ||| ||| ||| | | ||||| || | ||||||| ||
Sbjct 13962 CTCCCATAGGAGTTTGGGTCGTCTCTTAGTCCAAGTGTGGTTGATCATCCTCTCGGA 13906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1067971808256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |