Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq16027 102 1e-19 seq626 102 1e-19 seq27 102 1e-19 seq15058 89.7 8e-16 seq867 78.8 2e-12 seq14 75.2 2e-11 seq7718 73.4 6e-11 >seq16027 Length=16755 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || || || |||| Sbjct 9403 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGTAAAGCCAGT 9460 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| || ||||||||||| ||||||||||||||||||||||| || | Sbjct 9461 GGCGCGAAGCTACCTTCCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATCCTGGCTA 9520 Query 121 GAA 123 ||| Sbjct 9521 GAA 9523 >seq626 Length=299294 Score = 102 bits (112), Expect = 1e-19 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | | ||||||| || ||| || ||| || |||| Sbjct 34096 GTACGAGAGGAACCGTTGATTT--GCACAATTGGTCTTCGCGCTTGGTTGAAAAGCCAGT 34039 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||| ||| | ||||||||||| |||||||||||||||||| |||||| || | Sbjct 34038 GGCGCGAAGTTACTGTGCGCTGGATTATGACTGAACGCCTCTAAGTCATAATCCAGGCTA 33979 Query 121 GAA 123 ||| Sbjct 33978 GAA 33976 >seq27 Length=1457134 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 63205 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 63148 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||| |||||||||||||||| || || | Sbjct 63147 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATTCAGGCTA 63088 Query 121 GAA 123 ||| Sbjct 63087 GAA 63085 Score = 89.7 bits (98), Expect = 8e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 449 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 392 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||| | ||||||||||| |||||||||||||||||||||| Sbjct 391 GGTGCGAAGCTACCGTGCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATC 339 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 || || |||||||| || ||| | | ||||||| | || | ||| || ||||| Sbjct 93685 TATGAAAGGAACCGTTGA-TTC-GCACAATTGGTCATCTCGCTTAGTTGAAAAGCCAGTG 93628 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||| | |||||||||||| ||||||||||||||||||||||| |||| | Sbjct 93627 GCGCGAAGCTACTGTATGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCAGTGCCTG 93568 Query 122 A 122 | Sbjct 93567 A 93567 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| || ||| ||| | ||| || | | || |||| Sbjct 39196 GTACGAGAGGAACCGTTGA-TTCA-AACAATAGGTCATCGCGCTTGGTTAAAAAGCCAGT 39139 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| | | ||| ||||||| ||||| ||||||||||||||||| Sbjct 39138 GGCGCGAAGCTATCGTGCGCTAGATTATGACTGAATGCCTCTAAGTCAGAATC 39086 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 102833 GTACGAGAGGAACTATTGA-TTC-GTACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 102776 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || |||||||| | ||||||||||| ||||| |||||||||||| |||| |||| | Sbjct 102775 GGCGTGAAGCTACAGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAAAATCTATGCTA 102716 Query 121 GAA 123 ||| Sbjct 102715 GAA 102713 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||| |||| || ||| | | ||||||| | || || ||| || |||| Sbjct 6456 GTATGAGAGAAACCATTGA-TTC-GCACAATTGGTCATCACGCTTGGTTGAAAAGCCAGT 6399 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||||||||||| ||||||| |||||||||||||||| || | Sbjct 6398 GGTGCGAAGCTACCGTGCGCTGGATTATGACTGAACGGCTCTAAGTCAGAATCCGGGCTA 6339 Query 121 GAA 123 ||| Sbjct 6338 GAA 6336 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 15435 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 15378 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | || |||||||| | | ||||||||| |||||||||||||||||||||| Sbjct 15377 GGTGCAAAGCTACCGTGCGTTGGATTATGATTGAACGCCTCTAAGTCAGAATC 15325 >seq15058 Length=20236 Score = 89.7 bits (98), Expect = 8e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 11736 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 11793 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||| | ||||||||||| |||||||||||||||||||||| Sbjct 11794 GGTGCGAAGCTACCGTGCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATC 11846 >seq867 Length=430648 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || ||| | || |||||| | | || ||| || || || Sbjct 156855 TACGAGAGGAACCGTTGA-TTC-GCATTATTGGTCATCGTACTTGGTTGAAAAGCCAATG 156912 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 | ||| ||||||| |||||||| | ||||| |||||||||||||||||||||| || Sbjct 156913 GCATGAATCTACCATGCGCTGGATTGCGACTGAATGCCTCTAAGTCAGAATCCATGCTAG 156972 Query 122 AA 123 || Sbjct 156973 AA 156974 >seq14 Length=827631 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| || ||| | | ||||||| | || || ||| || |||| Sbjct 42231 GTATGAGAGGAACCATTGA-TTC-GCACAATTGGTCATCGCCCTTGGTTGAAAAGCCAGT 42174 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| | | ||||||||| | |||||| |||||||||||||| Sbjct 42173 GGCGCGAAGCTACCGTGCGATGGATTATGACAGAACGCTTCTAAGTCAGAATC 42121 >seq7718 Length=74243 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||| | | ||| || ||| || |||| Sbjct 64131 GTAGGAGAGGAACCGTTGA-TTC-GCACAATTGATCATCGCGCTTGGTTGAAAAGCCAGT 64074 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 | |||||||||||| | ||||||||||| |||||||||||| Sbjct 64073 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCT 64032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818585055232