Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq16027 102 1e-19
seq626 102 1e-19
seq27 102 1e-19
seq15058 89.7 8e-16
seq867 78.8 2e-12
seq14 75.2 2e-11
seq7718 73.4 6e-11
>seq16027
Length=16755
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || || || ||||
Sbjct 9403 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGTAAAGCCAGT 9460
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| || ||||||||||| ||||||||||||||||||||||| || |
Sbjct 9461 GGCGCGAAGCTACCTTCCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATCCTGGCTA 9520
Query 121 GAA 123
|||
Sbjct 9521 GAA 9523
>seq626
Length=299294
Score = 102 bits (112), Expect = 1e-19
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || || | | ||||||| || ||| || ||| || ||||
Sbjct 34096 GTACGAGAGGAACCGTTGATTT--GCACAATTGGTCTTCGCGCTTGGTTGAAAAGCCAGT 34039
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||| ||| | ||||||||||| |||||||||||||||||| |||||| || |
Sbjct 34038 GGCGCGAAGTTACTGTGCGCTGGATTATGACTGAACGCCTCTAAGTCATAATCCAGGCTA 33979
Query 121 GAA 123
|||
Sbjct 33978 GAA 33976
>seq27
Length=1457134
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 63205 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 63148
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| ||||| |||||||||||||||| || || |
Sbjct 63147 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATTCAGGCTA 63088
Query 121 GAA 123
|||
Sbjct 63087 GAA 63085
Score = 89.7 bits (98), Expect = 8e-16
Identities = 89/113 (79%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 449 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 392
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| ||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 391 GGTGCGAAGCTACCGTGCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATC 339
Score = 86.0 bits (94), Expect = 1e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
|| || |||||||| || ||| | | ||||||| | || | ||| || |||||
Sbjct 93685 TATGAAAGGAACCGTTGA-TTC-GCACAATTGGTCATCTCGCTTAGTTGAAAAGCCAGTG 93628
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
||||||||||| | |||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 93627 GCGCGAAGCTACTGTATGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCAGTGCCTG 93568
Query 122 A 122
|
Sbjct 93567 A 93567
Score = 84.2 bits (92), Expect = 4e-14
Identities = 88/113 (78%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| || ||| ||| | ||| || | | || ||||
Sbjct 39196 GTACGAGAGGAACCGTTGA-TTCA-AACAATAGGTCATCGCGCTTGGTTAAAAAGCCAGT 39139
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||| | | ||| ||||||| ||||| |||||||||||||||||
Sbjct 39138 GGCGCGAAGCTATCGTGCGCTAGATTATGACTGAATGCCTCTAAGTCAGAATC 39086
Score = 84.2 bits (92), Expect = 4e-14
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 102833 GTACGAGAGGAACTATTGA-TTC-GTACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 102776
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| || |||||||| | ||||||||||| ||||| |||||||||||| |||| |||| |
Sbjct 102775 GGCGTGAAGCTACAGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAAAATCTATGCTA 102716
Query 121 GAA 123
|||
Sbjct 102715 GAA 102713
Score = 80.6 bits (88), Expect = 4e-13
Identities = 93/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||| |||| || ||| | | ||||||| | || || ||| || ||||
Sbjct 6456 GTATGAGAGAAACCATTGA-TTC-GCACAATTGGTCATCACGCTTGGTTGAAAAGCCAGT 6399
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||| | ||||||||||| ||||||| |||||||||||||||| || |
Sbjct 6398 GGTGCGAAGCTACCGTGCGCTGGATTATGACTGAACGGCTCTAAGTCAGAATCCGGGCTA 6339
Query 121 GAA 123
|||
Sbjct 6338 GAA 6336
Score = 80.6 bits (88), Expect = 4e-13
Identities = 87/113 (77%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 15435 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 15378
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| || |||||||| | | ||||||||| ||||||||||||||||||||||
Sbjct 15377 GGTGCAAAGCTACCGTGCGTTGGATTATGATTGAACGCCTCTAAGTCAGAATC 15325
>seq15058
Length=20236
Score = 89.7 bits (98), Expect = 8e-16
Identities = 89/113 (79%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 11736 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 11793
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| ||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 11794 GGTGCGAAGCTACCGTGCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATC 11846
>seq867
Length=430648
Score = 78.8 bits (86), Expect = 2e-12
Identities = 92/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
|||||||||||||| || ||| | || |||||| | | || ||| || || ||
Sbjct 156855 TACGAGAGGAACCGTTGA-TTC-GCATTATTGGTCATCGTACTTGGTTGAAAAGCCAATG 156912
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
| ||| ||||||| |||||||| | ||||| |||||||||||||||||||||| ||
Sbjct 156913 GCATGAATCTACCATGCGCTGGATTGCGACTGAATGCCTCTAAGTCAGAATCCATGCTAG 156972
Query 122 AA 123
||
Sbjct 156973 AA 156974
>seq14
Length=827631
Score = 75.2 bits (82), Expect = 2e-11
Identities = 86/113 (76%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||||| || ||| | | ||||||| | || || ||| || ||||
Sbjct 42231 GTATGAGAGGAACCATTGA-TTC-GCACAATTGGTCATCGCCCTTGGTTGAAAAGCCAGT 42174
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||||| | | ||||||||| | |||||| ||||||||||||||
Sbjct 42173 GGCGCGAAGCTACCGTGCGATGGATTATGACAGAACGCTTCTAAGTCAGAATC 42121
>seq7718
Length=74243
Score = 73.4 bits (80), Expect = 6e-11
Identities = 79/102 (77%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | | ||||| | | ||| || ||| || ||||
Sbjct 64131 GTAGGAGAGGAACCGTTGA-TTC-GCACAATTGATCATCGCGCTTGGTTGAAAAGCCAGT 64074
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102
| |||||||||||| | ||||||||||| ||||||||||||
Sbjct 64073 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCT 64032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818585055232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |