Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9751 199 3e-46 seq10024 183 2e-41 seq12078 176 4e-39 >seq9751 Length=50749 Score = 199 bits (220), Expect = 3e-46 Identities = 559/844 (66%), Gaps = 22/844 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | |||||||||||| |||| || Sbjct 48777 ATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCCGAGGAGGTCGATCTGTCATCCGAT 48836 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | ||||||| | | | || || ||| | || ||||| | ||||| | || Sbjct 48837 CTCCGTCACTGGGAAACACTCACCGC-CGATGAGCGCCACTTCATCACTCATGTTCTTGC 48895 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 || || ||||| || ||||| |||||| ||| || | | || || | | || Sbjct 48896 CTTTTTCGCCGCCTCCGACGGAATCGTCCTTGAAAACCTCGCCGTTCGGTTTATGAAAGA 48955 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| ||| | || |||||||| ||||||||| ||||| || || || |||||| | || Sbjct 48956 GGTCCAAATCTCCGAGGCGCGGGCTTTCTACGGTTTCCAAATCGCTATTGAGAATATACA 49015 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||| |||||||||||| | || | || || ||||||| ||| | | | || | | | Sbjct 49016 CTCTGAGATGTACAGTCTCCTTTTGGAGACCTACATCAAGGACTCCGATGAAAAGAG-CC 49074 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTT 61451 || | ||| ||||| || ||| | ||| ||| || ||| || || |||||| | Sbjct 49075 GACTCTTCCGCGCCATTGAAACGGTGCCG--TGTGTGGCTAAAAAGGCCGAGTGGGCCAT 49132 Query 61452 CAATTGGATCACC--AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 || ||||||| | || | || || || | || || ||| | || ||||| Sbjct 49133 GAAATGGATCAACGGAGGAGAA-----ACTTTCGCCGAGCGGTTGATCGCCTTTGCTTGC 49187 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 |||||||| | |||||| ||| || ||| || || |||||||| || || || Sbjct 49188 GTCGAGGGGATCTTTTTCTCCGGAAGTTTCTGCGCCATATTCTGGTTGAAAAAGCGCGGT 49247 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 | |||||||| | || ||| || ||||| ||||| || |||||||| | || ||| Sbjct 49248 TTAATGCCCGGATTAACTTTCTCAAACGAGTTAATATCGCGAGACGAGGGTCTCCACTGT 49307 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTA-TCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||| ||| ||| | | | | ||| || ||| | || || || ||||| || Sbjct 49308 GATTTCGCTTGCTTGTTGTACGA--TCTACTCCGGTCTAAGCTCAGT--GAAGAGCGCGT 49363 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | | ||| | ||||| || ||| || ||| || || |||||| |||| Sbjct 49364 GAAAGGGATAATAAAAGAGGCCGTGTATATAGAGAGGGAGTTCGTGTGCGACGCTCTGCC 49423 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | || | | || ||||| | | ||||| ||||| || || || || || || Sbjct 49424 CTGCGCATTGGTTGGTATGAACGGCGATTTAATGAGTCAGTACATCGAGTTCGTAGCGGA 49483 Query 61809 CCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 || ||| ||| || || ||||| | | ||| || ||| ||| |||||||||| Sbjct 49484 TCGGCTGCTGGGCGCGTTGGGGTACG-GGAAGATGTACAATGTTGCAAATCCATTTGATT 49542 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| |||||||| || | || || || ||||| |||||||| | || || || | Sbjct 49543 GGATGGAACTGATTTCGTTGCAGGGGAAAACTAATTTCTTCGAGAAGAGAGTGGGTGAGT 49602 Query 61928 ATCA 61931 |||| Sbjct 49603 ATCA 49606 >seq10024 Length=53621 Score = 183 bits (202), Expect = 2e-41 Identities = 553/846 (65%), Gaps = 10/846 (1%) Strand=Plus/Plus Query 61088 TTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGT 61147 ||||| |||||||| || || ||||| || || ||||| | ||||| |||||||||| Sbjct 14448 TTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACTGCCGAGGAAGTCGATTTGT 14507 Query 61148 CCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 | || | ||||||| || | | || || || | || ||||| | ||| Sbjct 14508 CTTCCGATCTCCCACACTGGGAAACGCTCACCGC-CGACGAGCGCCACTTCATCACACAC 14566 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || ||||| || || || ||||||||| ||| ||| | | || ||| Sbjct 14567 GTTCTCGCCTTTTTTGCTGCCTCCGATGGTATCGTCCTTGAAAATCTTGCCGTCCGGTTC 14626 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | ||||| ||| | || ||||||||| |||||| || |||||||| ||||| || Sbjct 14627 ATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTTCTATGGTTTCCAGATCGCCATTGAA 14686 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA 61386 ||| ||||||| |||||||||||| | || |||| || ||||||| || || |||| Sbjct 14687 AATATCCACTCCGAGATGTACAGTCTGCTTCTCGAGACTTACATCAAAGATTCGGAGGAA 14746 Query 61387 CGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGG 61446 || | ||| |||||| || ||| | ||| ||| ||||| || ||| Sbjct 14747 AAGAGCCGCCTCTTCCGTGCCATTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGAGTGG 14806 Query 61447 GCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCG 61506 || | || ||||||| | | | | || || | || || ||| | || ||||| Sbjct 14807 GCTATGAAATGGATCAACGGCGGA---GAAACTTTCGCCGAGCGGTTGATCGCTTTTGCT 14863 Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 | ||||| |||||||| |||| || ||| || ||||||||||| || || Sbjct 14864 TGCATTGAGGGGATATTTTTCTCTGGAAGTTTCTGCGCCATATTTTGGTTGAAAAAGCGC 14923 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 || | ||||| || | || ||| ||||||||| || || || || || ||| | || Sbjct 14924 GGGTTAATGCCTGGATTAACTTTCTCCAATGAGTTAATCTCGCGAGATGAAGGCCTCCAC 14983 Query 61627 TGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGT 61686 || ||||||||| ||||| | | | | | || ||| || | | || ||||| Sbjct 14984 TGCGATTTTGCTTGCTTGCTGTACGATCTC-CTCCGGTCAA--AGCTGAGCGAAGAGCGC 15040 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 ||| | ||| || | ||||| || || || || ||| || |||||| | Sbjct 15041 GTGAAGGGGATAGTAAGAGAGGCCGTTGACATAGAGAGAGAGTTTGTGTGCGACGCTCTT 15100 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 ||| | | | || || || | | | ||| ||||| || || || || || Sbjct 15101 CCCTGTGCGTTAGTAGGGATTAACAGCGATTTGATGAGTCAGTACATCGAGTTCGTAGCG 15160 Query 61807 GACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || || |||||| | || ||||| | | || || ||| |||||| || || Sbjct 15161 GATCGGTTGTTGGGAGCGTTAGGGTACG-GGAAAATTTACAATGTTGTAAACCCTTTCGA 15219 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||||||| || | || || || ||||| ||||||||| | || || || Sbjct 15220 TTGGATGGAACTGATTTCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGTGA 15279 Query 61926 CTATCA 61931 || || Sbjct 15280 GTACCA 15285 >seq12078 Length=35335 Score = 176 bits (194), Expect = 4e-39 Identities = 547/839 (65%), Gaps = 12/839 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||| ||||| | ||||| || |||||||| || Sbjct 4070 ATGTACAAGAAAGCCGAAGCGTCCTTTTGGACTGCCGAGGAAGTTGATTTGTCTTCCGAT 4129 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| | | | || || | || ||||| | || || | || Sbjct 4130 CTCCGTCACTGGGAAACTCTCACCGCCGACGAGCGCCACTTCATCACTCACGTTCTCGCC 4189 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || ||||| || || || ||||| ||| ||| ||| | | || ||| | | ||| Sbjct 4190 TTTTTTGCAGCCTCTGATGGTATTGTCCTTGAAAATCTTGCCGTCCGGTTCATGAAAGAG 4249 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||| | || ||||||||| ||||||||| |||||||| ||||| || ||| ||||| Sbjct 4250 GTCCAAATCTCCGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCCATTGAAAATATCCAC 4309 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| | ||| |||| || ||||||| || | |||| || Sbjct 4310 TCCGAGATGTACAGTCTGCTCCTCGAGACTTACATCAAAGATTCCGAGGAAAAGAGTCGC 4369 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCA 61453 | ||| |||| | || ||| ||||| ||| || ||| || || ||||| | | Sbjct 4370 CTCTTCCGTGCCGTTGAAACGGTACCGTGCGTG--GCTAAAAAGGCCGAGTGGGCTATGA 4427 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 | ||||||| | | | | || || | || || ||| | || ||||| | | Sbjct 4428 AATGGATCAACGGCGGA---GAAACTTTCGCCGAGCGGTTGATAGCTTTTGCTTGCATTG 4484 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | |||||| |||| || ||| || ||||||||||| || || || | | Sbjct 4485 AGGGGATCTTTTTCTCTGGAAGTTTCTGCGCCATATTTTGGTTGAAAAAGCGCGGGTTGA 4544 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || | || ||| || ||||| || || || || || ||| | || || |||| Sbjct 4545 TGCCTGGATTAACTTTCTCAAACGAGTTAATCTCGCGAGATGAAGGCCTCCACTGCGATT 4604 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 ||||| ||||| | | | | | || ||| || | | || ||||| ||| | Sbjct 4605 TTGCTTGCTTGCTGTACGATCTC-CTCCGGTCAA--AGCTGAGCGAAGAGCGCGTGAAGG 4661 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 ||| || | ||||| || || || || ||| || |||||| ||||| Sbjct 4662 GGATAGTAAGAGAGGCTGTTGACATTGAGAGAGAGTTTGTGTGCGACGCTCTGCCCTGTG 4721 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 | | | || ||||| | | | ||| ||||| || || || || || || || Sbjct 4722 CGTTAGTAGGGATGAACGGCGATTTGATGAGTCAGTACATCGAGTTCGTAGCGGATCGGT 4781 Query 61814 TGTTGGTCGATTT-GGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATG 61872 || ||| | ||| ||| | | | || || ||| |||||| ||||||| ||| Sbjct 4782 TGCTGGGAGCTTTAGGGCACG-GGAAAATATACAATGTTGCAAACCCTTTTGATTGGATG 4840 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||||||| || | || || || ||||| ||||||||| | || ||||| || || Sbjct 4841 GAACTGATTTCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGCGAGTACCA 4899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397192542744320