Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq28723 123 3e-26 >seq28723 Length=2081 Score = 123 bits (136), Expect = 3e-26 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||| Sbjct 1212 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAATCGGAC 1153 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||||| | ||||| ||| | || || | || |||| ||| || ||||| || Sbjct 1152 CTCGTTAGTTCAACTTAACTGTAACTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 1093 Query 121 TCTCGG-GCACGGACCTTACCACCCATGC-CCTCACTCGCGCGGCATGACTGATGCGCAT 178 |||||| ||| ||||||| ||||| ||| ||||||| || ||| | || |||| Sbjct 1092 TCTCGGCGCA-TGACCTTAGCACCC-TGCGCCTCACT-GCAGATCATATTTCAT-AGCAT 1037 Query 179 TCGGAGTTTGGCAGGACTTG 198 |||||||||| | ||| ||| Sbjct 1036 TCGGAGTTTGTCTGGATTTG 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536910064992