Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq28723 143 5e-32 seq81313 73.4 8e-11 seq77801 73.4 8e-11 >seq28723 Length=2081 Score = 143 bits (158), Expect = 5e-32 Identities = 224/314 (71%), Gaps = 5/314 (2%) Strand=Plus/Minus Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77 ||||||| |||||| || ||||| ||||| ||||||| | | |||||| | | Sbjct 1699 TTAGCGGTTTTTCTTGGAAGTCTGATTACCTGCACTATCC-ACTCAGCCGAAGC-CTCGC 1642 Query 78 CATACTGTCAATCTCGA-CTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACACTC 136 |||| ||| | | || || | |||||||||| | | | || ||||| | Sbjct 1641 GGTACTATCAGCGTTCAGCTAGATCGGCGGATTTGCCTACCGTTCT-AATACCTACAGCC 1583 Query 137 TTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTC 196 |||||| |||||||||||| ||||| ||||||| || ||||||||| || | | Sbjct 1582 TTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACATCGCAGTT 1523 Query 197 AAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTT 256 | | |||| |||||| ||||| || | |||||| | || ||||| | |||| Sbjct 1522 ATAAAAAGTACTGGAATATTAACCAGTTGT-CCATCGAATTTCCCCTTCGGGTTCTCCTT 1464 Query 257 ATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAG 316 | | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | | Sbjct 1463 AGGTCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTGGG 1404 Query 317 GGGGTTTCCCACCC 330 ||||||| | ||| Sbjct 1403 CGGGTTTCTCTCCC 1390 >seq81313 Length=11173 Score = 73.4 bits (80), Expect = 8e-11 Identities = 95/130 (73%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | |||||| ||| ||| || ||||| | | Sbjct 10735 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAC 10677 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| |||||| |||||| || || ||||||||||| ||||||||||| ||| ||| Sbjct 10676 CGACTAACCCTGCGTCGATTAACGTTGCGCAGGAAACCTTGGTCTTTCGGCGTGGGTGTT 10617 Query 323 TCCCACCCCC 332 | ||| ||| Sbjct 10616 TTTCACACCC 10607 >seq77801 Length=9883 Score = 73.4 bits (80), Expect = 8e-11 Identities = 95/130 (73%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | |||||| ||| ||| || ||||| | | Sbjct 1586 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAC 1528 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| |||||| |||||| || || ||||||||||| ||||||||||| ||| ||| Sbjct 1527 CGACTAACCCTGCGTCGATTAACGTTGCGCAGGAAACCTTGGTCTTTCGGCGTGGGTGTT 1468 Query 323 TCCCACCCCC 332 | ||| ||| Sbjct 1467 TTTCACACCC 1458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 958728230400