Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01000056.1
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
seq28723 143 5e-32
seq81313 73.4 8e-11
seq77801 73.4 8e-11
>seq28723
Length=2081
Score = 143 bits (158), Expect = 5e-32
Identities = 224/314 (71%), Gaps = 5/314 (2%)
Strand=Plus/Minus
Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77
||||||| |||||| || ||||| ||||| ||||||| | | |||||| | |
Sbjct 1699 TTAGCGGTTTTTCTTGGAAGTCTGATTACCTGCACTATCC-ACTCAGCCGAAGC-CTCGC 1642
Query 78 CATACTGTCAATCTCGA-CTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACACTC 136
|||| ||| | | || || | |||||||||| | | | || ||||| |
Sbjct 1641 GGTACTATCAGCGTTCAGCTAGATCGGCGGATTTGCCTACCGTTCT-AATACCTACAGCC 1583
Query 137 TTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTC 196
|||||| |||||||||||| ||||| ||||||| || ||||||||| || | |
Sbjct 1582 TTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACATCGCAGTT 1523
Query 197 AAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTT 256
| | |||| |||||| ||||| || | |||||| | || ||||| | ||||
Sbjct 1522 ATAAAAAGTACTGGAATATTAACCAGTTGT-CCATCGAATTTCCCCTTCGGGTTCTCCTT 1464
Query 257 ATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAG 316
| | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | |
Sbjct 1463 AGGTCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTGGG 1404
Query 317 GGGGTTTCCCACCC 330
||||||| | |||
Sbjct 1403 CGGGTTTCTCTCCC 1390
>seq81313
Length=11173
Score = 73.4 bits (80), Expect = 8e-11
Identities = 95/130 (73%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262
|||| |||||| ||||| || | |||||| ||| ||| || ||||| | |
Sbjct 10735 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAC 10677
Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322
||||| |||||| |||||| || || ||||||||||| ||||||||||| ||| |||
Sbjct 10676 CGACTAACCCTGCGTCGATTAACGTTGCGCAGGAAACCTTGGTCTTTCGGCGTGGGTGTT 10617
Query 323 TCCCACCCCC 332
| ||| |||
Sbjct 10616 TTTCACACCC 10607
>seq77801
Length=9883
Score = 73.4 bits (80), Expect = 8e-11
Identities = 95/130 (73%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262
|||| |||||| ||||| || | |||||| ||| ||| || ||||| | |
Sbjct 1586 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAC 1528
Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322
||||| |||||| |||||| || || ||||||||||| ||||||||||| ||| |||
Sbjct 1527 CGACTAACCCTGCGTCGATTAACGTTGCGCAGGAAACCTTGGTCTTTCGGCGTGGGTGTT 1468
Query 323 TCCCACCCCC 332
| ||| |||
Sbjct 1467 TTTCACACCC 1458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 958728230400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |