Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq130631 401 9e-110 seq125715 401 9e-110 seq111469 401 9e-110 seq131474 389 6e-106 seq131001 260 2e-67 seq108251 253 3e-65 >seq130631 Length=123029 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 101124 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 101181 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101182 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 101241 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 101242 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 101301 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 101302 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 101361 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 101362 GCCATAGTCCCTCTAA 101377 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 104898 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 104955 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104956 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 105015 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 105016 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 105075 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 105076 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 105135 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 105136 GCCATAGTCCCTCTAA 105151 Score = 325 bits (360), Expect = 6e-87 Identities = 216/237 (91%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||| || |||||| || |||||||| | ||||||||||||||| | Sbjct 50677 GTACAAAGGGTAGGGACATAATCAACGTAAG-TTGATGACCCACGCTTACTAGGAATT-C 50734 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct 50735 CTCGTTGAAGACCAACAATTTCAATGATCTATCCCCATTACGATTAAATTTCAAAGATTA 50794 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| | |||| || |||| |||||||| ||||||||||||||||||||| ||||||| Sbjct 50795 CCCGGGCGTGTCAGCTAAGGCTATAGACTCATTGAATACATCAGTGTAGCGCACGTGCGG 50854 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 50855 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAA 50911 Score = 176 bits (194), Expect = 7e-42 Identities = 177/224 (79%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| | Sbjct 91501 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 91558 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116 |||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| | Sbjct 91559 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 91615 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173 |||||| ||| |||| ||| | || | || ||| || |||||||||| || Sbjct 91616 GTTACCCACTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACG 91675 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 91676 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 91719 >seq125715 Length=54709 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 20639 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 20696 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20697 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 20756 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 20757 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 20816 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 20817 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 20876 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 20877 GCCATAGTCCCTCTAA 20892 >seq111469 Length=30026 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 10397 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 10454 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10455 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 10514 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 10515 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 10574 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 10575 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 10634 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 10635 GCCATAGTCCCTCTAA 10650 >seq131474 Length=103143 Score = 389 bits (430), Expect = 6e-106 Identities = 242/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |||| | Sbjct 36684 GTACAAAGGGCAGGGATGTAGTCGACGCGAGCT-GATGACTCGCGCTTACTAGAAATT-C 36741 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36742 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 36801 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 36802 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 36861 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 36862 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 36921 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 36922 GCCATAGTCCCTCTAA 36937 Score = 370 bits (410), Expect = 2e-100 Identities = 238/256 (93%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 69328 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 69385 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69386 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 69445 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||| ||| ||||||||||||||| ||||||| || Sbjct 69446 CCCGGGCCTGTCGGCCAAGGCTATAGACTTGTTTAATACATCAGTGTAGTGCGCGTGTGG 69505 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 69506 CCCAGAACATCTAAGGGCATCACATACCTGTTATTGCCTCAAACTTCCTTGTCCTAAGCA 69565 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 69566 GCCATAGTCCCTCTAA 69581 Score = 275 bits (304), Expect = 9e-72 Identities = 206/238 (87%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 45251 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATGCGCTTACTAGGCATT-C 45308 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 45309 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 45368 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| ||||| |||| || |||||||| | ||||||||||||||||||| Sbjct 45369 ACCCAAACCTTTCGGCTAAGGAAATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 45428 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 45429 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAA 45486 Score = 232 bits (256), Expect = 1e-58 Identities = 137/140 (98%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 34641 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 34698 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34699 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 34758 Query 121 CCCGGACCTGTCGGCCAAGG 140 ||||| |||||||||||||| Sbjct 34759 CCCGGGCCTGTCGGCCAAGG 34778 >seq131001 Length=88751 Score = 260 bits (288), Expect = 2e-67 Identities = 207/245 (84%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||| || ||||||| | |||| |||||||| ||| ||| |||| |||| Sbjct 13330 GTACAAATGGCAGG-ACATAGTCAATGTGAGCG-GATGACTCACGCCTACAAGGA-TTTC 13274 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || Sbjct 13273 CTCTTTGAAGACCAACAATTGTAATGAACTATCCCCATCGCGATGAAATTTCAAAGACTA 13214 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | || | | ||||||||| |||||||| |||||||||||||| |||| | ||||| Sbjct 13213 TCTGGGCTTAGCGGCCAAGGCTATAGACTCATTGAATACATCAGTATAGCATACATGCGG 13154 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| |||| |||||||||||| |||| |||||||| | Sbjct 13153 CCCAGAACATCTAAGGGCATCACATACCTATTATTGCCTCAAGTTTCCTTGGCCTAAGAA 13094 Query 241 GCCAT 245 |||| Sbjct 13093 ACCAT 13089 >seq108251 Length=27153 Score = 253 bits (280), Expect = 3e-65 Identities = 157/167 (94%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 90 TATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 || ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 23665 TAACCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACT 23724 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23725 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 23784 Query 210 GTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||||||||| |||||||| |||||| |||||| || Sbjct 23785 GTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAA 23831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751034912340