Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq131474 176 3e-42
seq130631 122 5e-26
seq125715 122 5e-26
seq111469 122 5e-26
seq108251 122 5e-26
seq131001 96.9 2e-18
>seq131474
Length=103143
Score = 176 bits (194), Expect = 3e-42
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||||||||||||||| || |||||||| ||||| || ||
Sbjct 37214 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAACGGGTCAAAATACTAACACCGTCC 37273
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 37274 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 37330
Score = 176 bits (194), Expect = 3e-42
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||||||||||||||| || |||||||| ||||| || ||
Sbjct 45779 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAACGGGTCAAAATACTAACACCGTCC 45838
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 45839 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 45895
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| |||| ||||||| |||||||| | ||||| || |||||| ||
Sbjct 69859 GAACCCAAAATCTTTAATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAACATCCGCC 69918
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||| ||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 69919 AATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 69975
>seq130631
Length=123029
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||| | ||||| || |||||| ||
Sbjct 51188 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAACATCCGCC 51247
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 51248 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 51304
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||| | ||||| || |||||| ||
Sbjct 101654 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAACATCCGCC 101713
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 101714 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 101770
Score = 75.2 bits (82), Expect = 6e-12
Identities = 90/120 (75%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57
||||||||| |||||| |||| || ||| | || ||||||| |||| | | || |
Sbjct 92146 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 92205
Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| || || ||||| ||||| ||||| |||| | ||||||||||||| ||||||
Sbjct 92206 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 92265
>seq125715
Length=54709
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||| | ||||| || |||||| ||
Sbjct 21169 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAACATCCGCC 21228
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 21229 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 21285
>seq111469
Length=30026
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||| | ||||| || |||||| ||
Sbjct 10927 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAACATCCGCC 10986
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 10987 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 11043
>seq108251
Length=27153
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||| | ||||| || |||||| ||
Sbjct 24108 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAACATCCGCC 24167
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24168 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24224
>seq131001
Length=88751
Score = 96.9 bits (106), Expect = 2e-18
Identities = 94/119 (79%), Gaps = 4/119 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC--AAAATGATAACATCGC 58
||||||||| ||||||||||||| |||||||| || ||||| ||||| ||||||
Sbjct 12802 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGACGGAGTCCTAAAAT--CAACATCTG 12745
Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|| |||||| | | |||| ||||| |||| | |||| ||| |||||||||| | || ||
Sbjct 12744 CCAATCCCTGGGCAGCATTGTTTATGGTTTAAACTATGACTGTATCTGATCATGTTTGA 12686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278054237640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |