Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq131474 504 1e-140
seq130631 239 8e-61
seq125715 239 8e-61
seq111469 239 8e-61
seq108251 239 8e-61
seq131001 170 4e-40
seq92364 105 1e-20
>seq131474
Length=103143
Score = 504 bits (558), Expect = 1e-140
Identities = 300/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||
Sbjct 37645 TGGTCCGGCCGGGCCTTTCCTTCTGGGGAACCTCATGCCCTTCACTGGGCGTGTTGGGGA 37586
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37585 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 37526
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 37525 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 37466
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 37465 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGG 37406
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 37405 ATTGATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 37346
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 37345 ACGAAAGTTAGGGG 37332
Score = 504 bits (558), Expect = 1e-140
Identities = 300/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||
Sbjct 46210 TGGTCCGGCCGGGCCTTTCCTTCTGGGGAACCTCATGCCCTTCACTGGGCGTGTTGGGGA 46151
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46150 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 46091
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 46090 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 46031
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 46030 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGG 45971
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 45970 ATTGATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 45911
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 45910 ACGAAAGTTAGGGG 45897
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 70222 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 70163
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 70162 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 70104
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 70103 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 70044
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 70043 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 69985
Query 311 GTTAGGGG 318
||| ||||
Sbjct 69984 GTTGGGGG 69977
>seq130631
Length=123029
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 51551 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 51492
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 51491 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 51433
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 51432 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 51373
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 51372 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 51314
Query 311 GTTAGGGG 318
||| ||||
Sbjct 51313 GTTGGGGG 51306
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 102017 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 101958
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 101957 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 101899
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 101898 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 101839
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 101838 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 101780
Query 311 GTTAGGGG 318
||| ||||
Sbjct 101779 GTTGGGGG 101772
Score = 149 bits (164), Expect = 1e-33
Identities = 151/193 (78%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185
|||||||||||| ||||||||| | ||||||||||||||||| | || | || |||
Sbjct 92457 GCATGGAATAATGGAATAGGACCTT-GGTTCTATTTTGTTGGTCTTAAGAATCCAAGGTA 92399
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||| ||||| || |||||| | ||||| | ||||||||||||||||||
Sbjct 92398 ATGATTAAGAGGGACAGACGGGGGCATTTGTATTGCGGCGCTAGAGGTGAAATTCTTGGA 92339
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
||||| |||||| |||||||| || ||||| |||||||||||||||| |||
Sbjct 92338 CCGTCGCAAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 92280
Query 306 CGAAAGTTAGGGG 318
|||||||||| ||
Sbjct 92279 CGAAAGTTAGAGG 92267
>seq125715
Length=54709
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 21532 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 21473
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 21472 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 21414
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 21413 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 21354
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 21353 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 21295
Query 311 GTTAGGGG 318
||| ||||
Sbjct 21294 GTTGGGGG 21287
>seq111469
Length=30026
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 11290 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 11231
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 11230 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 11172
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 11171 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 11112
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 11111 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 11053
Query 311 GTTAGGGG 318
||| ||||
Sbjct 11052 GTTGGGGG 11045
>seq108251
Length=27153
Score = 239 bits (264), Expect = 8e-61
Identities = 204/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 24471 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24412
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||
Sbjct 24411 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 24353
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 24352 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 24293
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 24292 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 24234
Query 311 GTTAGGGG 318
||| ||||
Sbjct 24233 GTTGGGGG 24226
>seq131001
Length=88751
Score = 170 bits (188), Expect = 4e-40
Identities = 188/246 (76%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGG 132
|||||||||| ||||||||||| || || || ||| | ||| | ||||||||||||||
Sbjct 12444 TTTACTTTGATGAAATTAGAGTGCTCTAAACAATCCTATTCTCTGTATACATTAGCATGG 12503
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192
|||| | |||||| | ||| | ||||| ||| || |||| | ||||||||||
Sbjct 12504 GATAAGATGATAGGATTTT-GGTCCAATTTTCTTGCCTTTCAGGATTGGAGTAATGATTA 12562
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
| | ||| ||| ||||| | ||||| || || |||||||||||||||||||||||
Sbjct 12563 ACATGGACAGTTGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTATGA 12622
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||||| || || ||||||| || ||||| ||||||| |||||||| ||| ||||||
Sbjct 12623 AAGACGAAGTA---CGAAAGCATTTCCCAAGTATGTTTTTATTAATCA-AGAATGAAAGT 12678
Query 313 TAGGGG 318
| ||||
Sbjct 12679 TGGGGG 12684
>seq92364
Length=16132
Score = 105 bits (116), Expect = 1e-20
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGAAT 135
|||||||| ||||| |||| | |||||| |||| ||| |||||||||||||| ||
Sbjct 15800 ACTTTGAAGAAATTTGAGTTCTTAAAGCAAGCCTACACTCTCGATACATTAGCATGGGAT 15741
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
|||| ||| || | ||| |||||||| ||| | | ||| | ||||||||||| |
Sbjct 15740 AATATCATATGATTTT-GGTCCTATTTTGGTGGCCTTTGGGATCAGAGTAATGATTAACA 15682
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
|||||| | |||| | | ||| || | |||| | |||||||||||||||| |||
Sbjct 15681 GGGATATTAGGGGACATTTGCATTTCATAATTAGAGATAAAATTCTTGGATTTATGAAAG 15622
Query 256 AC 257
||
Sbjct 15621 AC 15620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913987579648
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