Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq81313 307 1e-81 seq77801 307 1e-81 >seq81313 Length=11173 Score = 307 bits (340), Expect = 1e-81 Identities = 184/193 (95%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 10924 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTTAACTAAAA 10865 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 120 | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 10864 GTTAACTCGTCATCAGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTAC 10805 Query 121 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10804 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 10745 Query 181 TTAACCAGAAGTA 193 |||||||||||| Sbjct 10744 ATAACCAGAAGTA 10732 >seq77801 Length=9883 Score = 307 bits (340), Expect = 1e-81 Identities = 184/193 (95%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1775 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTTAACTAAAA 1716 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 120 | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 1715 GTTAACTCGTCATCAGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTAC 1656 Query 121 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1655 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 1596 Query 181 TTAACCAGAAGTA 193 |||||||||||| Sbjct 1595 ATAACCAGAAGTA 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517734705528