Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq28723 145 7e-33 seq81313 104 2e-20 seq77801 104 2e-20 >seq28723 Length=2081 Score = 145 bits (160), Expect = 7e-33 Identities = 98/110 (89%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||| ||||||| ||||||| ||||||||||||||||||||| ||||| || Sbjct 113 ACGGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTTCG 172 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 || ||| ||| ||| ||||||||||| |||| |||||||||||||||||| Sbjct 173 GGTATTTGCAAATAGGAATTGATCCGAAGATTTCCGAATGGGGCAACCCG 222 >seq81313 Length=11173 Score = 104 bits (114), Expect = 2e-20 Identities = 141/191 (74%), Gaps = 12/191 (6%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 9359 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 9418 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATAT 119 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| | || Sbjct 9419 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCCAT 9478 Query 120 -ATTGGAGATATATCAT-AACGC------TAG--GCGTTAGGCGAACGTGGGGAACTGAA 169 || || |||| | || | ||| || |||||||| ||||||||||| Sbjct 9479 CATAAGATGGTTATCTTGTACTCAATACATAGGTGCAAGAGGCGAACCAGGGGAACTGAA 9538 Query 170 ACATCTAAGTA 180 ||||||||||| Sbjct 9539 ACATCTAAGTA 9549 >seq77801 Length=9883 Score = 104 bits (114), Expect = 2e-20 Identities = 141/191 (74%), Gaps = 12/191 (6%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 210 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 269 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATAT 119 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| | || Sbjct 270 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCCAT 329 Query 120 -ATTGGA--GATATATCATAACG-----CTAG--GCGTTAGGCGAACGTGGGGAACTGAA 169 || || | ||| | || | ||| || |||||||| ||||||||||| Sbjct 330 CATAAGATGGTTATCTTGTACTGAATACATAGGTGCAAGAGGCGAACCAGGGGAACTGAA 389 Query 170 ACATCTAAGTA 180 ||||||||||| Sbjct 390 ACATCTAAGTA 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476188093356