Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01000750.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
seq24148 107 9e-22
seq27482 89.7 2e-16
seq131474 73.4 2e-11
seq131001 73.4 2e-11
seq130631 73.4 2e-11
seq125899 73.4 2e-11
seq125715 73.4 2e-11
seq116717 73.4 2e-11
seq107718 73.4 2e-11
>seq24148
Length=1539
Score = 107 bits (118), Expect = 9e-22
Identities = 86/102 (84%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct 1438 GGAAAAGAAACTAACAAGGATTCCCTCAGTAGCGGCGAGCGAACAGGGAAAAGCCCAGCG 1497
Query 61 CCGAAT-CCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101
| |||| ||||| || || | | |||||| |||| ||||
Sbjct 1498 CTGAATCCCCCGGGCCTCGCTCG---GCGGGAAATGTAGCGT 1536
>seq27482
Length=1887
Score = 89.7 bits (98), Expect = 2e-16
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||| ||| |||| ||||||| ||||||| || ||||||||
Sbjct 1126 GGAAAAGAAACTAACCAGGATTTCCTTAGTAGCGGCGAGCGAACAGGAAAAAGCCCAGCA 1067
Query 61 CCGAATCCC 69
| |||||||
Sbjct 1066 CTGAATCCC 1058
>seq131474
Length=103143
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 33794 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 33737
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 35849 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 35792
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 68481 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 68424
>seq131001
Length=88751
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 14176 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 14233
>seq130631
Length=123029
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 100277 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 100220
>seq125899
Length=55411
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 21116 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 21173
>seq125715
Length=54709
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 19792 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 19735
>seq116717
Length=36260
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 2932 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 2875
>seq107718
Length=26442
Score = 73.4 bits (80), Expect = 2e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58
|||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 18213 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 18270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230113851840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |