Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq24148 107 9e-22 seq27482 89.7 2e-16 seq131474 73.4 2e-11 seq131001 73.4 2e-11 seq130631 73.4 2e-11 seq125899 73.4 2e-11 seq125715 73.4 2e-11 seq116717 73.4 2e-11 seq107718 73.4 2e-11 >seq24148 Length=1539 Score = 107 bits (118), Expect = 9e-22 Identities = 86/102 (84%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||| Sbjct 1438 GGAAAAGAAACTAACAAGGATTCCCTCAGTAGCGGCGAGCGAACAGGGAAAAGCCCAGCG 1497 Query 61 CCGAAT-CCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 | |||| ||||| || || | | |||||| |||| |||| Sbjct 1498 CTGAATCCCCCGGGCCTCGCTCG---GCGGGAAATGTAGCGT 1536 >seq27482 Length=1887 Score = 89.7 bits (98), Expect = 2e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| ||| |||| ||||||| ||||||| || |||||||| Sbjct 1126 GGAAAAGAAACTAACCAGGATTTCCTTAGTAGCGGCGAGCGAACAGGAAAAAGCCCAGCA 1067 Query 61 CCGAATCCC 69 | ||||||| Sbjct 1066 CTGAATCCC 1058 >seq131474 Length=103143 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 33794 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 33737 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 35849 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 35792 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 68481 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 68424 >seq131001 Length=88751 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 14176 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 14233 >seq130631 Length=123029 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 100277 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 100220 >seq125899 Length=55411 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 21116 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 21173 >seq125715 Length=54709 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 19792 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 19735 >seq116717 Length=36260 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 2932 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 2875 >seq107718 Length=26442 Score = 73.4 bits (80), Expect = 2e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 |||||||||||| || ||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 18213 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAG 18270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230113851840