Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq131474 347 2e-93 seq130631 300 2e-79 seq125715 300 2e-79 seq111469 300 2e-79 seq108251 300 2e-79 seq131001 201 2e-49 >seq131474 Length=103143 Score = 347 bits (384), Expect = 2e-93 Identities = 233/258 (90%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45396 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 45455 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||||| | | || |||| | ||||||||||||||||||| || Sbjct 45456 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGCGATAGTCCCTCTAAGAAGCCGGC 45513 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 45514 GACCCGCCAAAGCGGGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 45573 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 45574 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 45633 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 45634 AAGAGCTCTCAATCTGTC 45651 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36828 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 36887 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 36888 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 36945 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 36946 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 37005 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 37006 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 37065 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 37066 AGAAAGAGCTCTCAATCTGTC 37086 Score = 271 bits (300), Expect = 1e-70 Identities = 210/246 (85%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 69486 TCAGTGTAGTGCGCGTGTGGCCCAGAACATCTAAGGGCATCACATACCTGTTATTGCCTC 69545 Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 |||||||| | || | ||||| |||||||||||||||| ||||| || | | Sbjct 69546 AAACTTCCTTGTCCTAAGCAGCCA-TAGTCCCTCTAAGAAGTTGGCCACGAAGGGAATCC 69604 Query 135 GATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || |||| |||||||||||||||||| || |||| | |||||||||||||||||| Sbjct 69605 TTTGCATAGCTAGTTAGCAGGTTAAGGTCTCATTTGTTAACAGAATTAACCAGACAAATC 69664 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 69665 GCTCCACCAACTAAAAACGGGCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAA 69724 Query 253 TCTGTC 258 |||||| Sbjct 69725 TCTGTC 69730 >seq130631 Length=123029 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101268 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 101327 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 101328 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 101385 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 101386 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 101445 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 101446 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 101505 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 101506 AGAAAGAGCTCTCAATCTGTC 101526 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105042 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 105101 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 105102 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 105159 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 105160 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 105219 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 105220 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 105279 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 105280 AGAAAGAGCTCTCAATCTGTC 105300 Score = 232 bits (256), Expect = 1e-58 Identities = 198/244 (81%), Gaps = 19/244 (8%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50835 TCAGTGTAGCGCACGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 50894 Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 |||||||| | | || ||||| ||| || | | ||| | |||| | || Sbjct 50895 AAACTTCCTTGGCCTAAGAAGC---TAG-CCGTAGAGGAAATCTTCCACATAACA----- 50945 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | |||||| || ||||||| ||||||| | |||||||| ||||||||| | Sbjct 50946 ---------AGTTAGCAAATTGAGGTCTCATTCGTTAACAGAATTAACTAGACAAATCGC 50996 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 50997 TCCACTAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATC 51056 Query 255 TGTC 258 |||| Sbjct 51057 TGTC 51060 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 91902 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 91961 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 91962 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 92018 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 91663 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 91719 >seq125715 Length=54709 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20783 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 20842 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 20843 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 20900 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 20901 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 20960 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 20961 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 21020 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 21021 AGAAAGAGCTCTCAATCTGTC 21041 >seq111469 Length=30026 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10541 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 10600 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 10601 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 10658 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 10659 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 10718 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 10719 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 10778 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 10779 AGAAAGAGCTCTCAATCTGTC 10799 >seq108251 Length=27153 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23722 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 23781 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 23782 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 23839 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 23840 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 23899 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 23900 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 23959 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 23960 AGAAAGAGCTCTCAATCTGTC 23980 >seq131001 Length=88751 Score = 201 bits (222), Expect = 2e-49 Identities = 199/250 (80%), Gaps = 13/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||| |||| | ||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 13173 TCAGTATAGCATACATGCGGCCCAGAACATCTAAGGGCATCACATACCTATTATTGCCTC 13114 Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC-----AACCA 129 || |||| | | || ||| ||| |||||| |||||||||| || || | Sbjct 13113 AAGTTTCCTTGGCCTAAGAAACCA-TAGTCC-TCTAAGAAGCTGACCGTGGAGGGAATCC 13056 Query 130 TAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | ||| || | ||| |||| ||| | |||||||| | |||| |||||||| ||||| Sbjct 13055 T--TCGCATAG--CTAGTTAGGAGGCTGAGGTCTCGATTGTTAATAGAATTAACAAGACA 13000 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 12999 AATCGCTCCACCAAATAAGAACAACCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 12940 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 12939 TCAATCTGTC 12930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795777417756