Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq131474 347 2e-93
seq130631 300 2e-79
seq125715 300 2e-79
seq111469 300 2e-79
seq108251 300 2e-79
seq131001 201 2e-49
>seq131474
Length=103143
Score = 347 bits (384), Expect = 2e-93
Identities = 233/258 (90%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45396 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 45455
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||||||||||||||| | | || |||| | ||||||||||||||||||| ||
Sbjct 45456 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGCGATAGTCCCTCTAAGAAGCCGGC 45513
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
||| ||| || | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 45514 GACCCGCCAAAGCGGGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 45573
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 45574 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 45633
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||||||||||
Sbjct 45634 AAGAGCTCTCAATCTGTC 45651
Score = 300 bits (332), Expect = 2e-79
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36828 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 36887
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 36888 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 36945
Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 36946 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 37005
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37006 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 37065
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 37066 AGAAAGAGCTCTCAATCTGTC 37086
Score = 271 bits (300), Expect = 1e-70
Identities = 210/246 (85%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 69486 TCAGTGTAGTGCGCGTGTGGCCCAGAACATCTAAGGGCATCACATACCTGTTATTGCCTC 69545
Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
|||||||| | || | ||||| |||||||||||||||| ||||| || | |
Sbjct 69546 AAACTTCCTTGTCCTAAGCAGCCA-TAGTCCCTCTAAGAAGTTGGCCACGAAGGGAATCC 69604
Query 135 GATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192
|| |||| |||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct 69605 TTTGCATAGCTAGTTAGCAGGTTAAGGTCTCATTTGTTAACAGAATTAACCAGACAAATC 69664
Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 69665 GCTCCACCAACTAAAAACGGGCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAA 69724
Query 253 TCTGTC 258
||||||
Sbjct 69725 TCTGTC 69730
>seq130631
Length=123029
Score = 300 bits (332), Expect = 2e-79
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101268 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 101327
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 101328 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 101385
Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 101386 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 101445
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101446 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 101505
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 101506 AGAAAGAGCTCTCAATCTGTC 101526
Score = 300 bits (332), Expect = 2e-79
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105042 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 105101
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 105102 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 105159
Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 105160 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 105219
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105220 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 105279
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 105280 AGAAAGAGCTCTCAATCTGTC 105300
Score = 232 bits (256), Expect = 1e-58
Identities = 198/244 (81%), Gaps = 19/244 (8%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50835 TCAGTGTAGCGCACGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 50894
Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
|||||||| | | || ||||| ||| || | | ||| | |||| | ||
Sbjct 50895 AAACTTCCTTGGCCTAAGAAGC---TAG-CCGTAGAGGAAATCTTCCACATAACA----- 50945
Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194
| |||||| || ||||||| ||||||| | |||||||| ||||||||| |
Sbjct 50946 ---------AGTTAGCAAATTGAGGTCTCATTCGTTAACAGAATTAACTAGACAAATCGC 50996
Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 50997 TCCACTAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATC 51056
Query 255 TGTC 258
||||
Sbjct 51057 TGTC 51060
Score = 179 bits (198), Expect = 6e-43
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 91902 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 91961
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 91962 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 92018
Score = 89.7 bits (98), Expect = 8e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 91663 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 91719
>seq125715
Length=54709
Score = 300 bits (332), Expect = 2e-79
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20783 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 20842
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 20843 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 20900
Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 20901 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 20960
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20961 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 21020
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 21021 AGAAAGAGCTCTCAATCTGTC 21041
>seq111469
Length=30026
Score = 300 bits (332), Expect = 2e-79
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10541 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 10600
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 10601 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 10658
Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 10659 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 10718
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10719 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 10778
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 10779 AGAAAGAGCTCTCAATCTGTC 10799
>seq108251
Length=27153
Score = 300 bits (332), Expect = 2e-79
Identities = 225/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23722 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 23781
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 23782 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 23839
Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 23840 CCGCGGAGGAAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 23899
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23900 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 23959
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||||||||
Sbjct 23960 AGAAAGAGCTCTCAATCTGTC 23980
>seq131001
Length=88751
Score = 201 bits (222), Expect = 2e-49
Identities = 199/250 (80%), Gaps = 13/250 (5%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||| |||| | ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 13173 TCAGTATAGCATACATGCGGCCCAGAACATCTAAGGGCATCACATACCTATTATTGCCTC 13114
Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC-----AACCA 129
|| |||| | | || ||| ||| |||||| |||||||||| || || |
Sbjct 13113 AAGTTTCCTTGGCCTAAGAAACCA-TAGTCC-TCTAAGAAGCTGACCGTGGAGGGAATCC 13056
Query 130 TAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
| ||| || | ||| |||| ||| | |||||||| | |||| |||||||| |||||
Sbjct 13055 T--TCGCATAG--CTAGTTAGGAGGCTGAGGTCTCGATTGTTAATAGAATTAACAAGACA 13000
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
|||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 12999 AATCGCTCCACCAAATAAGAACAACCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 12940
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 12939 TCAATCTGTC 12930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795777417756
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