Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001151.1 Length=269 Score E Sequences producing significant alignments: (Bits) Value seq78274 297 3e-78 >seq78274 Length=10059 Score = 297 bits (328), Expect = 3e-78 Identities = 233/268 (87%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61 |||||||| ||||||| ||||||| ||||||||||||| ||||| |||||| |||||| Sbjct 7488 CCGCAGAAGT-CCGGGTT-CCACAGGTGTACCGGCGCCGGTCCCTT-GCCCTT-GGGCAG 7543 Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGTGTCT 121 || |||||||||||||||| | |||| ||||||||||||||| |||| ||||||| || Sbjct 7544 TT-GGGCCAACAGATCGTTAG-CCTT-GGCGGAATCGGTCATGGGGC-TCTCCTGGTGCT 7599 Query 122 TACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGATCAGG 181 || ||||| |||||||||||||||| |||||||| | | ||| || ||||| ||||| Sbjct 7600 TATTGATCACTCATGCCCAGCAGGCTGCGGGCGTACTGGCGCAGTGGACGGGCAATCAGA 7659 Query 182 TCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGCACAGTA 241 |||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 7660 TCTTGTGGCTTGTTGTCGTGGAACGTCAGTAAACCACCACGACTGCGAATACGTGCAGTA 7719 Query 242 TCAATCAAATACTGGGTGCTGGTCTCGA 269 || ||||||||||||||||||||||||| Sbjct 7720 TCGATCAAATACTGGGTGCTGGTCTCGA 7747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 760622592072