Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001161.1 Length=375 Score E Sequences producing significant alignments: (Bits) Value seq98788 455 7e-126 >seq98788 Length=19698 Score = 455 bits (504), Expect = 7e-126 Identities = 337/375 (90%), Gaps = 14/375 (4%) Strand=Plus/Minus Query 1 GCGACGTAGAATGTTCGTTTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTT 60 |||||||||| ||| |||| |||||||||||| ||||||||||||||| ||| |||||| Sbjct 7820 GCGACGTAGA-TGT-CGTT-CGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT- 7768 Query 61 CATTCGGGCGTTGCCCCCGTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGT 120 |||| |||||||||||||||||||| ||||| |||| | |||||||||||||||||||| Sbjct 7767 CATT-GGGCGTTGCCCCCGTTAATT-GGCCATTAAACAT-GGCCGGATTGGCCTAAAAGT 7711 Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTC 180 |||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| Sbjct 7710 -GGCGGCGATTATAGGCACATTCTGACGCCGATGCCAT-GCGCCAGA-CGTCGTACGGTC 7654 Query 181 ATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGG 240 ||||||||| | ||||| || |||||||||||||||||||||||| ||||||||||| Sbjct 7653 ATTCGTCTT-GTGGCTGGTAGCGCGGGTCGCTGGCTTGCAGTTGGGTGAGGCGGGCCAGC 7595 Query 241 GTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGT 300 | ||||||||||| |||||||||||||| ||||||||||| ||||| | ||||||| Sbjct 7594 GGATCCTGGCGATAGAAGCGGCTGAGTTGCGCGTACACCTGGGGATAGTGGCTGACCAGC 7535 Query 301 AAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 360 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 7534 AAATCCGGGGCGCTGAAAAAATATTCGCTGGTGACGGCAAAGAATTCAGCCGGGTTTTCG 7475 Query 361 GCGGCGTAGGGGTCG 375 ||||||||||||||| Sbjct 7474 GCGGCGTAGGGGTCG 7460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1096145943424