Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq73496 426 2e-117 seq26406 75.2 2e-11 >seq73496 Length=8179 Score = 426 bits (472), Expect = 2e-117 Identities = 252/261 (97%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||||||||||||||| |||||||| ||||| | ||||||||||| ||||||||||| Sbjct 2625 CGATGCACGCCTTGACGCAACGAGCCAGTACTTCCTGGCGCGCTTTTT-CGTCCAGGCCC 2567 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2566 GGTGCCGGCGCTTCTTCCAGAACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 2507 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2506 CCCAGGTGGATGGCGTGGCCTTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 2447 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2446 TTGGTCAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 2387 Query 241 CGAGTCTGCTTGGCCGCTTCG 261 |||||||||||||| |||||| Sbjct 2386 CGAGTCTGCTTGGCAGCTTCG 2366 >seq26406 Length=1738 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 71 CTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGA 130 |||| ||| |||||||||||||| || || |||||||| ||||| ||| | ||||||| Sbjct 1628 CTTCCTCCCACACCTTCTGGTGACGGCGCTGGAGCGAGCAGTCGCGCTCGGCGAGGTGGA 1687 Query 131 TGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179 |||| ||| | ||||| ||| || ||||| || | ||| || || Sbjct 1688 CGGCGCCGCCGCGCCCGTCACCCAGCACCTGCACCTCGATGTGGCGGGG 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735055446120