Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001182.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq73496 426 2e-117
seq26406 75.2 2e-11
>seq73496
Length=8179
Score = 426 bits (472), Expect = 2e-117
Identities = 252/261 (97%), Gaps = 1/261 (0%)
Strand=Plus/Minus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
||||||||||||||||||| |||||||| ||||| | ||||||||||| |||||||||||
Sbjct 2625 CGATGCACGCCTTGACGCAACGAGCCAGTACTTCCTGGCGCGCTTTTT-CGTCCAGGCCC 2567
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2566 GGTGCCGGCGCTTCTTCCAGAACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 2507
Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2506 CCCAGGTGGATGGCGTGGCCTTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 2447
Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 TTGGTCAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 2387
Query 241 CGAGTCTGCTTGGCCGCTTCG 261
|||||||||||||| ||||||
Sbjct 2386 CGAGTCTGCTTGGCAGCTTCG 2366
>seq26406
Length=1738
Score = 75.2 bits (82), Expect = 2e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 71 CTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGA 130
|||| ||| |||||||||||||| || || |||||||| ||||| ||| | |||||||
Sbjct 1628 CTTCCTCCCACACCTTCTGGTGACGGCGCTGGAGCGAGCAGTCGCGCTCGGCGAGGTGGA 1687
Query 131 TGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179
|||| ||| | ||||| ||| || ||||| || | ||| || ||
Sbjct 1688 CGGCGCCGCCGCGCCCGTCACCCAGCACCTGCACCTCGATGTGGCGGGG 1736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 735055446120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |