Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001187.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq53579 260 2e-67 >seq53579 Length=3412 Score = 260 bits (288), Expect = 2e-67 Identities = 182/207 (88%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 55 GCGACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGC 114 || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 3412 GCAACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTTACGCCGCCAACGGCCTGC 3353 Query 115 AGGTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCG 174 ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 3352 AGGTTGAGCATCTGCGGGATAAACAGCTCGCGGGTTTGCGGCATGACCTGGCCGATGCCT 3293 Query 175 GCGCGGGTCTGGCCCAGCAGCCATTCGTTCAGACCTGCTTCTTTAAGCTGTGCAGTCAAT 234 |||||| | || |||||||||||||| |||||| | |||| || ||| ||||| |||| Sbjct 3292 GCGCGGATTTGCCCCAGCAGCCATTCATTCAGATCGGCTTGTTCAAGGGTTGCAGCCAAT 3233 Query 235 TGGCTGCGTACGGCCTCGGCCTGTTCG 261 || ||||||| ||| ||| | || ||| Sbjct 3232 TGACTGCGTATGGCGTCGCCTTGCTCG 3206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735055446120