Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001188.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
seq9679 928 0.0
seq84777 93.3 2e-16
seq36092 82.4 3e-13
>seq9679
Length=1120
Score = 928 bits (1028), Expect = 0.0
Identities = 573/603 (95%), Gaps = 7/603 (1%)
Strand=Plus/Plus
Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60
||||||||||| ||||||||||||||||| |||| |||||| ||||||||| ||||||||
Sbjct 361 TCGATCGCCTT-GGCACGGGAAGTGGCCT-GCTT-GGCTTT-CGAGGCGTTGGCCGAGAA 416
Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120
||||| ||||||||||| |||| |||| ||||||||||||||| |||||||||||||||
Sbjct 417 GCGGCT-GACGAAGGATT-GCAGTTCGGAGATCTGCGCCTTCTT-CTTGGCGTTGTCCGA 473
Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 474 CAGCAGTTGCTCGCGGGACTGGGTCGCTACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 533
Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 534 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTGCAAACGCTGTTCAGGAAGTG 593
Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 594 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATGTTTTCCAGCCA 653
Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCGAATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 713
Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420
||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 714 GGAGAACAGCGCCTGGGCCAGCAATACACGAAGTTTCCAGCCTGGGGACACTTCGCTCAT 773
Query 421 CGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGA 480
||| |||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 774 CGGGCCGAAGTGTTGCTCCAACGGGATACCCAGGCCCAGCAGCAGCTCACCGGCACGGGA 833
Query 481 TTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCC 893
Query 541 GTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCCA 600
|||||||||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct 894 GTCTTCTTCGCTCATTTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGCCTTGACCTTCCA 953
Query 601 CAG 603
|||
Sbjct 954 CAG 956
>seq84777
Length=12484
Score = 93.3 bits (102), Expect = 2e-16
Identities = 135/189 (71%), Gaps = 10/189 (5%)
Strand=Plus/Minus
Query 200 TCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATG 259
||||| ||| ||| |||| || | | | ||||||| ||||||||| | |||||
Sbjct 11569 TCCAGTTCAAGGATGCGGGTCGCCAGGTTTTGCAGGAAGGAACGGTCGTGCG---TGATG 11513
Query 260 ATCATCAGG-----CTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGA 314
| || || | |||||| | | ||| | |||||||||| || | | ||
Sbjct 11512 AACAGCACGGCGCCCTGGAATTCCTTG--AGGGCCTCTTCCAGCCAGGCAATCGCGCCGA 11455
Query 315 TGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCCT 374
|||||||||||||||| ||||||||||||| |||| || || ||||| | ||| ||||
Sbjct 11454 TGTCCAAGTGGTTGGTGGGTTCGTCGAGCAGTAGCAGATCCGGCTCGGACACCAGGGCCT 11395
Query 375 GGGCCAGCA 383
|||||||||
Sbjct 11394 GGGCCAGCA 11386
>seq36092
Length=2495
Score = 82.4 bits (90), Expect = 3e-13
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 223 CACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGC-TGGAACGCTGGG 281
|||| ||| |||||||| |||||||| | ||| || || || ||| | | | |
Sbjct 77 CACGTTGTCCAGGAAGTACCGGTCGTGCGTGATCGCGACCACGGTGCCTGGGAAGTCGTG 136
Query 282 TCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGA 341
|||| || |||||||||| || || | | ||||||||||||||||||||||||||
Sbjct 137 A-AGGAAATGTTCCAGCCAGGCGACGGAATCGGCGTCCAAGTGGTTGGTCGGTTCGTCGA 195
Query 342 GCAACAGCACTTCAGGATCGGAAAACAGC 370
||| ||||| ||||| | || | ||||
Sbjct 196 GCAGCAGCATGTCAGGGGCCGACAGCAGC 224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1879029435696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |