Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq9679 928 0.0 seq84777 93.3 2e-16 seq36092 82.4 3e-13 >seq9679 Length=1120 Score = 928 bits (1028), Expect = 0.0 Identities = 573/603 (95%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 ||||||||||| ||||||||||||||||| |||| |||||| ||||||||| |||||||| Sbjct 361 TCGATCGCCTT-GGCACGGGAAGTGGCCT-GCTT-GGCTTT-CGAGGCGTTGGCCGAGAA 416 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| ||||||||||| |||| |||| ||||||||||||||| ||||||||||||||| Sbjct 417 GCGGCT-GACGAAGGATT-GCAGTTCGGAGATCTGCGCCTTCTT-CTTGGCGTTGTCCGA 473 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 474 CAGCAGTTGCTCGCGGGACTGGGTCGCTACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 533 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 534 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTGCAAACGCTGTTCAGGAAGTG 593 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 594 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATGTTTTCCAGCCA 653 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GCGAATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 713 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 ||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 714 GGAGAACAGCGCCTGGGCCAGCAATACACGAAGTTTCCAGCCTGGGGACACTTCGCTCAT 773 Query 421 CGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGA 480 ||| |||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||| Sbjct 774 CGGGCCGAAGTGTTGCTCCAACGGGATACCCAGGCCCAGCAGCAGCTCACCGGCACGGGA 833 Query 481 TTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 TTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCC 893 Query 541 GTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCCA 600 |||||||||||||||||||||||||||||| || | || |||||||||||||||||||| Sbjct 894 GTCTTCTTCGCTCATTTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGCCTTGACCTTCCA 953 Query 601 CAG 603 ||| Sbjct 954 CAG 956 >seq84777 Length=12484 Score = 93.3 bits (102), Expect = 2e-16 Identities = 135/189 (71%), Gaps = 10/189 (5%) Strand=Plus/Minus Query 200 TCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATG 259 ||||| ||| ||| |||| || | | | ||||||| ||||||||| | ||||| Sbjct 11569 TCCAGTTCAAGGATGCGGGTCGCCAGGTTTTGCAGGAAGGAACGGTCGTGCG---TGATG 11513 Query 260 ATCATCAGG-----CTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGA 314 | || || | |||||| | | ||| | |||||||||| || | | || Sbjct 11512 AACAGCACGGCGCCCTGGAATTCCTTG--AGGGCCTCTTCCAGCCAGGCAATCGCGCCGA 11455 Query 315 TGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCCT 374 |||||||||||||||| ||||||||||||| |||| || || ||||| | ||| |||| Sbjct 11454 TGTCCAAGTGGTTGGTGGGTTCGTCGAGCAGTAGCAGATCCGGCTCGGACACCAGGGCCT 11395 Query 375 GGGCCAGCA 383 ||||||||| Sbjct 11394 GGGCCAGCA 11386 >seq36092 Length=2495 Score = 82.4 bits (90), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 223 CACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGC-TGGAACGCTGGG 281 |||| ||| |||||||| |||||||| | ||| || || || ||| | | | | Sbjct 77 CACGTTGTCCAGGAAGTACCGGTCGTGCGTGATCGCGACCACGGTGCCTGGGAAGTCGTG 136 Query 282 TCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGA 341 |||| || |||||||||| || || | | |||||||||||||||||||||||||| Sbjct 137 A-AGGAAATGTTCCAGCCAGGCGACGGAATCGGCGTCCAAGTGGTTGGTCGGTTCGTCGA 195 Query 342 GCAACAGCACTTCAGGATCGGAAAACAGC 370 ||| ||||| ||||| | || | |||| Sbjct 196 GCAGCAGCATGTCAGGGGCCGACAGCAGC 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1879029435696