Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001197.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq66618 297 3e-78
>seq66618
Length=5823
Score = 297 bits (328), Expect = 3e-78
Identities = 231/273 (85%), Gaps = 2/273 (1%)
Strand=Plus/Minus
Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62
|| |||||||||| ||| ||||||| |||||||||| ||||||||||||| || ||||
Sbjct 2666 GAGTGAGCCCGGCCGCTAAGGCCAGTT-GCCACAGGCCGCGCTCGGTGGCTTCCT-GCGC 2609
Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 2608 CAGGCTGACGTGGGCAAAGCCGCAGAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGGGG 2549
Query 123 AGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGCCGAATCTGGCAAGCCGGCGAGCTC 182
|| |||||||||||||||||||||| |||||||| || |||| |||||||| ||
Sbjct 2548 CGCGGCGCCGACCAGGATGATCGGCTTGTGTTTGGCGCTGTCGGGCAGACCGGCGAGTTC 2489
Query 183 ATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGGCGCCAGCTGCGCGGT 242
||||||||| |||| ||| |||||||||||||| || ||||| || || || | ||||
Sbjct 2488 ATGGCCGATAAGCAAGCCGGACAGGTAATCGGGCTGTTGGTCAGGGGCGAGTTCGCCGGT 2429
Query 243 CAGCCCAAGGGTACGGGCACTGAACAGGGTCGA 275
||||| ||||| ||||||||||||| ||| ||
Sbjct 2428 GAGCCCCAGGGTGCGGGCACTGAACAAGGTGGA 2396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 779797951536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |