Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001197.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq66618 297 3e-78 >seq66618 Length=5823 Score = 297 bits (328), Expect = 3e-78 Identities = 231/273 (85%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62 || |||||||||| ||| ||||||| |||||||||| ||||||||||||| || |||| Sbjct 2666 GAGTGAGCCCGGCCGCTAAGGCCAGTT-GCCACAGGCCGCGCTCGGTGGCTTCCT-GCGC 2609 Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122 |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 2608 CAGGCTGACGTGGGCAAAGCCGCAGAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGGGG 2549 Query 123 AGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGCCGAATCTGGCAAGCCGGCGAGCTC 182 || |||||||||||||||||||||| |||||||| || |||| |||||||| || Sbjct 2548 CGCGGCGCCGACCAGGATGATCGGCTTGTGTTTGGCGCTGTCGGGCAGACCGGCGAGTTC 2489 Query 183 ATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGGCGCCAGCTGCGCGGT 242 ||||||||| |||| ||| |||||||||||||| || ||||| || || || | |||| Sbjct 2488 ATGGCCGATAAGCAAGCCGGACAGGTAATCGGGCTGTTGGTCAGGGGCGAGTTCGCCGGT 2429 Query 243 CAGCCCAAGGGTACGGGCACTGAACAGGGTCGA 275 ||||| ||||| ||||||||||||| ||| || Sbjct 2428 GAGCCCCAGGGTGCGGGCACTGAACAAGGTGGA 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779797951536