Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001212.1 Length=311 Score E Sequences producing significant alignments: (Bits) Value seq28725 462 4e-128 >seq28725 Length=2081 Score = 462 bits (512), Expect = 4e-128 Identities = 289/311 (93%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 879 Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120 |||||||||||| |||||||||| |||||| ||||||||||||| |||||||| || || Sbjct 878 GCTGGTCACCCAACTGCCCTACCGCGCGCTGCTGACCATTGGTCGGCTGCTGGGCGCCGG 819 Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180 |||||||| ||||||||||| || |||||||||||||| || ||||||||||||||||| Sbjct 818 CATGTACCGCGTGGCCGGCGAGCGTCGCCGCATCGCCGCACGCAACCTGGAACTGTGCTT 759 Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240 ||||||||||||||| ||||||| ||||| ||||| || |||||||||||||||||||| Sbjct 758 CCCGGAAAAATCCGCCCAAGAGCGCAAACACTTGCTCAAGGAAAACTTTGCCTCCACCGG 699 Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 698 CATCGCCTTCTTTGAAATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGGCT 639 Query 301 GGCCCACGTCG 311 |||||| |||| Sbjct 638 GGCCCATGTCG 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 891617254272