Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001228.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value seq56085 569 7e-160 >seq56085 Length=3724 Score = 569 bits (630), Expect = 7e-160 Identities = 487/603 (81%), Gaps = 30/603 (5%) Strand=Plus/Minus Query 2 GACCCCGAGGTCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTAC 61 ||||| | | |||| || |||||| |||||||||| ||||| || |||||||| |||||| Sbjct 1453 GACCCTGGGATCACTGCCGCCGACTTGAAGCTGGCGCTGGCTGAAATGGAGCAATTCTAC 1394 Query 62 GACGTGCAACCGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCG 121 |||||| | || | ||||| || || | ||||||||| || | ||| || || || Sbjct 1393 GACGTGGAGCCTACGGAGCTGGAACAATT-GATCCACGCCGCAGAAACCCACGCGCGCCG 1335 Query 122 GCGCAGCATCGGCGAGGTGCT---CAGTCG------------------------CCGTGC 154 |||||||||| || || || ||| || || ||| Sbjct 1334 CCGCAGCATCGCTGAAGTACTGGCCAGCCGGGTGCCTTGAAGCCATCGTCCACTCCCTGC 1275 Query 155 ATAAATGCAATAACGACCTGCAGGATTCCCCGGTGTACTGGGCAAATGTGCACTGGTAGG 214 |||||||||| ||| ||||||| ||||| | |||||||||||||| |||||||||| | Sbjct 1274 ATAAATGCAAAAACAACCTGCATGATTCATGGTTGTACTGGGCAAATTTGCACTGGTACG 1215 Query 215 ATCGCAAGAAGGTTCGTCCCCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGC 274 ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1214 ATCGCGAGATGGTTCGTCCGCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTATC 1155 Query 275 GATGACTGCTCAGGTTTCATCCGAGGCAAGCCACACCGACCATCTTCAAGCCGACATACT 334 |||||||||||||||||||||||||||||||||| | || ||||| | ||| | || Sbjct 1154 GATGACTGCTCAGGTTTCATCCGAGGCAAGCCACGCAGAAACACTTCAGGACGAAGTCCT 1095 Query 335 CGCCGAAGTCCGCAACCATATCGGCCACCTCACCCTCAACCGCCCCGCCGGCCTGAACGC 394 |||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1094 CGCCGAGGTCCGTAACCACATCGGCCACCTCACCCTCAACCGCCCCGCCGGCTTGAACGC 1035 Query 395 CATTACCCTGGACATGGTCCGCAGCCTGAGCCACCACCTGCAGGCCTGGGCCGACGATCC 454 |||||| || ||||||| |||||||||| ||| ||||||||||||||||| || || Sbjct 1034 TATTACCTTGAACATGGTGCGCAGCCTGACGTCCCAACTGCAGGCCTGGGCCGATGA-CC 976 Query 455 CAC-GGTGTATGCCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCGGGCGGCG 513 ||| |||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||| Sbjct 975 CACAGGTGTACGCCGTGGTCTTGCGCGGCGCCGGTGAAAAAGCCTTCTGCGCCGGCGGCG 916 Query 514 ATATCCGTTCCTTGCATGACAGTTTCAAGAGCGGCGACACCCTGCACGAAGACTTCTTTG 573 |||||||||| || | ||||||||||||| |||||||| ||||||| | |||||||| | Sbjct 915 ATATCCGTTCGCTGTACGACAGTTTCAAGAACGGCGACAGCCTGCACCAGGACTTCTTCG 856 Query 574 TCG 576 ||| Sbjct 855 TCG 853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1738493857792