Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001228.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
seq56085 569 7e-160
>seq56085
Length=3724
Score = 569 bits (630), Expect = 7e-160
Identities = 487/603 (81%), Gaps = 30/603 (5%)
Strand=Plus/Minus
Query 2 GACCCCGAGGTCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTAC 61
||||| | | |||| || |||||| |||||||||| ||||| || |||||||| ||||||
Sbjct 1453 GACCCTGGGATCACTGCCGCCGACTTGAAGCTGGCGCTGGCTGAAATGGAGCAATTCTAC 1394
Query 62 GACGTGCAACCGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCG 121
|||||| | || | ||||| || || | ||||||||| || | ||| || || ||
Sbjct 1393 GACGTGGAGCCTACGGAGCTGGAACAATT-GATCCACGCCGCAGAAACCCACGCGCGCCG 1335
Query 122 GCGCAGCATCGGCGAGGTGCT---CAGTCG------------------------CCGTGC 154
|||||||||| || || || ||| || || |||
Sbjct 1334 CCGCAGCATCGCTGAAGTACTGGCCAGCCGGGTGCCTTGAAGCCATCGTCCACTCCCTGC 1275
Query 155 ATAAATGCAATAACGACCTGCAGGATTCCCCGGTGTACTGGGCAAATGTGCACTGGTAGG 214
|||||||||| ||| ||||||| ||||| | |||||||||||||| |||||||||| |
Sbjct 1274 ATAAATGCAAAAACAACCTGCATGATTCATGGTTGTACTGGGCAAATTTGCACTGGTACG 1215
Query 215 ATCGCAAGAAGGTTCGTCCCCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGC 274
||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1214 ATCGCGAGATGGTTCGTCCGCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTATC 1155
Query 275 GATGACTGCTCAGGTTTCATCCGAGGCAAGCCACACCGACCATCTTCAAGCCGACATACT 334
|||||||||||||||||||||||||||||||||| | || ||||| | ||| | ||
Sbjct 1154 GATGACTGCTCAGGTTTCATCCGAGGCAAGCCACGCAGAAACACTTCAGGACGAAGTCCT 1095
Query 335 CGCCGAAGTCCGCAACCATATCGGCCACCTCACCCTCAACCGCCCCGCCGGCCTGAACGC 394
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1094 CGCCGAGGTCCGTAACCACATCGGCCACCTCACCCTCAACCGCCCCGCCGGCTTGAACGC 1035
Query 395 CATTACCCTGGACATGGTCCGCAGCCTGAGCCACCACCTGCAGGCCTGGGCCGACGATCC 454
|||||| || ||||||| |||||||||| ||| ||||||||||||||||| || ||
Sbjct 1034 TATTACCTTGAACATGGTGCGCAGCCTGACGTCCCAACTGCAGGCCTGGGCCGATGA-CC 976
Query 455 CAC-GGTGTATGCCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCGGGCGGCG 513
||| |||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 975 CACAGGTGTACGCCGTGGTCTTGCGCGGCGCCGGTGAAAAAGCCTTCTGCGCCGGCGGCG 916
Query 514 ATATCCGTTCCTTGCATGACAGTTTCAAGAGCGGCGACACCCTGCACGAAGACTTCTTTG 573
|||||||||| || | ||||||||||||| |||||||| ||||||| | |||||||| |
Sbjct 915 ATATCCGTTCGCTGTACGACAGTTTCAAGAACGGCGACAGCCTGCACCAGGACTTCTTCG 856
Query 574 TCG 576
|||
Sbjct 855 TCG 853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1738493857792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |