Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001232.1
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
seq83090 230 4e-58
seq61275 80.6 5e-13
>seq83090
Length=11856
Score = 230 bits (254), Expect = 4e-58
Identities = 226/292 (77%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 2 GAAATCGACGATAAAGAAGTCACACTCGCCCACGGCCCCTTCAAGACACTGGGCATGCAG 61
|| ||| |||| ||||||||||| ||||||||||| ||||||| ||| |||| |||
Sbjct 366 GAGATCAACGACAAAGAAGTCACGCTCGCCCACGGTCCCTTCAGAACATTGGGTATGTCA 425
Query 62 GGCATGACGATGACGTTTCCACTTGCCAATCCTACCCTGATTCAGGGTCTGAAAACGGGC 121
|||||||||||||| || || || ||| ||| | ||||| ||| ||| |||||||||
Sbjct 426 GGCATGACGATGACTTTCCCTCTCGCCGCTCCAGCTCTGATGAAGGATCTTAAAACGGGC 485
Query 122 GACAAGGTTCGGGTCGCGGTGAGCCAAACCGACGATGGATTGCGTGTCGAACGTCTAGAT 181
|||||||||||| |||| || ||||| || || ||||| |||| || || ||||| ||
Sbjct 486 GACAAGGTTCGGATCGCTGTCAGCCAGACGGAAGATGGTCTGCGCGTTGAGCGTCTGGAA 545
Query 182 AAAACGGGAGGTCAGCCATGATCGCTGCCCTCATCCGTTGGTCTGTTGCCAACCGCTTTT 241
| || ||||||||||||| ||||| || || ||||| || || |||||||||
Sbjct 546 CGCTCTGGGACCCAGCCATGATCGCGGCCCTTATTCGCTGGTCGGTGGCTAACCGCTTTC 605
Query 242 TGGTGCTGTTGGCGACACTTTTCGTCACAGCTTGGGGCATCTGGTCAGTTCA 293
| ||| || ||||||| || || ||||| || ||||| |||||| | |||||
Sbjct 606 TTGTGTTGCTGGCGACGCTGTTTGTCACGGCATGGGGGATCTGGGCGGTTCA 657
>seq61275
Length=4655
Score = 80.6 bits (88), Expect = 5e-13
Identities = 83/109 (76%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 194 CAGCCATGATCGCTGCCCTCATCCGTTGGTCTGTTGCCAACCGCTTTTTGGTGCTGTTGG 253
|| |||||||||| | || |||||||| || |||||||| ||| |||| || | |
Sbjct 1798 CAACCATGATCGCCTTATTGATTCGTTGGTCAGTCGCCAACCGTTTTCTGGTAGTGCTCG 1739
Query 254 CGACACTTTTCGTCACAGCTTGGGGCATCTGGTCAGTTCAGAACACACC 302
|||| | || ||||| ||||||||||||||| | || || ||||| ||
Sbjct 1738 CGACGTTGTTTGTCACGGCTTGGGGCATCTGGGCGGTGCAAAACACGCC 1690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 878834211200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |