Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001262.1 Length=237 Score E Sequences producing significant alignments: (Bits) Value seq27767 318 8e-85 >seq27767 Length=1935 Score = 318 bits (352), Expect = 8e-85 Identities = 203/214 (95%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 618 TCGAGATC-AGGAACGCGGCGGTCTTGCCGGTGCCGGTTTGGGCGCGGCCGA-TGGCGTC 561 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 ||| ||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 560 TTT-GCCGGCCAGGGTGAAGCCCAGTACCT-GCGCCT-GGATCGGCGTGCAGTACGGGAA 504 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 503 ACCCAAGTCCTGGATGGCGTGCATCAGTTCAGGCGCCAGTTTGAAATCGTGGAAGCGGGT 444 Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237 |||||||||||||||||||||||||||||||||| Sbjct 443 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658354008264