Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001277.1 Length=476 Score E Sequences producing significant alignments: (Bits) Value seq97821 526 6e-147 >seq97821 Length=19066 Score = 526 bits (582), Expect = 6e-147 Identities = 401/474 (85%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | Sbjct 4590 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTCCGCATCGGCGTGCTCAACGACTCCAG 4649 Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120 |||||| ||||| ||||||||||| || ||| ||||| | || |||||||| | |||||| Sbjct 4650 CATGCAGGCGCGCATCTTCGCCCCTCAACGCTTCCGCATCGCCGCCAGCCCGGCCTACCT 4709 Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180 || || ||| | |||| ||||| ||||||||| | |||||||||||||||||||| Sbjct 4710 GGCCCGACACGGCGCACCGCAACATCCTGACGAACTGATCAACCACCAGTGCCTGGCCTA 4769 Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240 ||| || | |||||||| ||||||||||| |||||| | ||||| ||||||||| | Sbjct 4770 CAAAGGCATTACCGGCCAGCAACGCTGGTTTTTCCGCAAGGGCCAGGGCGACTGGACACC 4829 Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300 || ||||||||||||||||||||||||||||| |||||||| || ||| |||||||||| Sbjct 4830 TTATAGCGTCAAGGGCCCGATCACCGGCAACCATGCCGACACGCTCACCTACGCCGCCGA 4889 Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360 ||| || |||||||||||||||||||| || |||||||| ||||| | ||||||| || Sbjct 4890 GCAGGGGCTGGGGCTGGTGGTGTTTCCGTCGTGGTTGATTGGCGACAGTTTGCGTGCGGG 4949 Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420 | | ||| ||| |||||||| || ||||| |||||||| || |||||||||| ||||| Sbjct 4950 CGCTTTGCGGGCAGTGCTGACGGAGTACGACGTGGCGACAACATTGGAGCCGCAGCAGAT 5009 Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474 |||||| ||||||||||| || ||||| |||||| ||||||||||||||||||| Sbjct 5010 TGCGGCACTGTGGCCGGGGAGCCGGCGCTTGTCGCTGAAGGTGCGGACGGTGAT 5063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1418917780992