Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq69501 511 1e-142 seq83148 102 2e-19 >seq69501 Length=6721 Score = 511 bits (566), Expect = 1e-142 Identities = 298/308 (97%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 60 GTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 6414 GTCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAGGTATTGCAG 6473 Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACG 179 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6474 GTCGGAGCCGAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACG 6533 Query 180 GCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCAT 239 |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 6534 ACGGTTGAGCGAGGTGTTCAGCGACACACCGTTACCGGTCAGCACTTCCAGCTCTTTCAT 6593 Query 240 CATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATC 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 6594 CATGTCGTAGTAGCGCGGGTTGTACTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATC 6653 Query 300 TTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGT 359 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 6654 TTCATGGACCACTTCCGGCACTCGGGTCTTCCACTCTTCCGCCACTTCAAAGGTGAAGGT 6713 Query 360 CATGAACG 367 |||||||| Sbjct 6714 CATGAACG 6721 >seq83148 Length=11876 Score = 102 bits (112), Expect = 2e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 343 ACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCC 402 |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 11876 ACTTCAAAGGTGAAGGTCATGAACGGCGCCGGATGGTCGACCTTGATCATCTGTGGGGCG 11817 Query 403 ACGGTGTCG 411 || |||||| Sbjct 11816 ACAGTGTCG 11808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1211193331072