Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001305.1 Length=327 Score E Sequences producing significant alignments: (Bits) Value seq73398 477 2e-132 >seq73398 Length=8139 Score = 477 bits (528), Expect = 2e-132 Identities = 303/327 (93%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 5682 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGCCGATGGAACGTGCCGAAGAACGCTTTA 5623 Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120 |||| |||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||| Sbjct 5622 ATACCTTGGAGGCGTTGTTCGAGCGCCTCATCCCG-AAATCTGCTTGAAGGACGCCCCAA 5564 Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5563 TGCGCCTGTTCCGCATGTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCGTTCGCCG 5504 Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 5503 ACAGCCCGTACCAGGTGGAAATGATCCTGGTGCGCCAGAACGCCGAACCGGTGATCAACA 5444 Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300 |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 5443 GCCGCGCCGCCCCGGAAAACTGGGATGCCGGGGCAGTGCGCCTGGG---CGACAGACTGA 5387 Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327 ||||||| |||||| ||| || |||| Sbjct 5386 GCCCGCCGCGCCTGTCCAACATTGTCG 5360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942749426560