Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001307.1 Length=477 Score E Sequences producing significant alignments: (Bits) Value seq67116 113 1e-22 >seq67116 Length=5960 Score = 113 bits (124), Expect = 1e-22 Identities = 306/464 (66%), Gaps = 16/464 (3%) Strand=Plus/Plus Query 21 CCAGTGGTTGCCGCTGCCAACCCATTGCGCAGTGTAAAGAGCGATGGTTCGGCAATCT-- 78 || ||||| |||| |||||||| ||||||| || |||| ||| | | | | | Sbjct 4712 CCGGTGGTCGCCGTGGCCAACCCGCTGCGCAGCGTCAAGACCGAC--TCAGACTACGTGG 4769 Query 79 -CGGCATTGTTGACGAGCATTCATTCGCCGGTGGTGTTGGTCGGCCACTCCTATGGCGGC 137 || ||| ||||| | || ||| |||||| | |||||||||| ||||| |||||| Sbjct 4770 CCGACATCGTTGAACA-CACTCAAGGCCCGGTGATCCTGGTCGGCCATTCCTACGGCGGC 4828 Query 138 AACGTTATCAGTGACGCGGCCAACGATCATGCA--AACGTCAAAGCCCTGGTTTACGTCA 195 || ||| |||| | ||| || ||| || ||||| || ||||| ||||| Sbjct 4829 TCGGTGATCTCCAACGCCGTGCACGG-CA-GCAGCAAGGTCAAGGCGCTGGTCTACGTTG 4886 Query 196 GTGCGTTTGCACCTGAGGCCGGGGAAACCGTCGCCGGGCTGGCCGGCAAATTCCCGGGCA 255 |||||||| || || || || |||| | |||| ||||| | ||| ||| Sbjct 4887 CCGCGTTTGCCCCGGAAAAAGGCGAGACCGCGTTTGAGCTGTCCGGCCGTTACCCTGGCG 4946 Query 256 GTACGCTGGGCCCAACGCTGGCTGCGCCTGTACCGCTGGCC---GATGGGGGCAAGGACT 312 | || || ||||| || |||| | || || | | || || |||| | ||| Sbjct 4947 GCACCCTCGGCCCGACCCTGGATAAACCCGT---GGTCTCCAAAGACGGGGTGACCGACC 5003 Query 313 NNNNNNNNNNGCAGGACAAGTTTCACAACCAGTTCGCCGCTGACGTCCCCGCTAAAGAGG 372 ||| |||||||| ||| |||||||||||| ||||| | | || || | Sbjct 5004 TGTACATCCAGCAAGACAAGTTCAACAGCCAGTTCGCCGCCGACGTGGCGCCCAAGGAAG 5063 Query 373 CGGCATTGATGGCCGCCACCCAACGCCCGGTAACGGAAGCGGCGCTCAACGAAGCGTCCG 432 | |||||||| ||| ||||||||| | || ||||| ||||| || ||| |||| | Sbjct 5064 CTCAGTTGATGGCAGCCGGGCAACGCCCGATCACCGAAGCCGCGCTGAAGGAACCGTCGG 5123 Query 433 GCAGCCCTGCCTGGAAGCATATACCGTCCTGGTACATCTACGGC 476 | ||| |||||||| | | ||||||| | ||| |||||| Sbjct 5124 GTGACCCGGCCTGGAAAACTGTGCCGTCCTACTTCATATACGGC 5167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1422113541760