Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001353.1 Length=424 Score E Sequences producing significant alignments: (Bits) Value seq27674 313 6e-83 >seq27674 Length=1918 Score = 313 bits (346), Expect = 6e-83 Identities = 332/425 (78%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGT-TCAACGTCATTCGCTCACTCAGG 59 ||||| || ||||| |||| || ||| ||||| || || || ||| ||| | || | Sbjct 932 GCGCGTCAGCGCGGCCTGCCGTT-GCCTTACGCCGTGTCG--GTGATT-GCTGCC-CAAG 878 Query 60 CCGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCA 119 | | |||||| | ||||| |||| ||| ||| || || |||||||| ||||||||||| Sbjct 877 CGGAGCCGGTGATGACGT-CGGCTGGCTTGGCACT-GCTGGCCGAGC-CGCTGCCCGCCG 821 Query 120 TTCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGC 179 | ||| ||| |||| ||| |||||| ||||| |||||||| || ||||| | || Sbjct 820 T-CGATGCGCCGTGCGATACGTTGGTGATTGCCGGCGGCTGGGGCGTATACGGCGCC-GC 763 Query 180 CGAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGC 239 ||| |||||| |||||||| | |||||||| || ||| ||| ||||||||||||||| | Sbjct 762 CGAAGACCCGGCGCTGGTGGAGTGGGTGCGCGAGAAAGCCCGTCACACCCGGCGCATGAC 703 Query 240 CTCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGT 299 || || |||||||| || || ||||| ||||||||||| |||| ||||| || ||||| Sbjct 702 GTCAGTGTGCACCGGCGCGTTCCTGCTCGCCGCCAGTGGCATGCTCGATGGCTGTCGCGT 643 Query 300 GGCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGA 359 |||||| || ||||| || || |||||| |||||||||| ||||| || | |||||||| Sbjct 642 GGCCACCCATTGGACACGTTGCGAAGAATTGGCGCGCAAATTCCCGGCGTTGACGGTGGA 583 Query 360 GGCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGG 419 | |||| ||||| ||||||||||| ||||| || |||||||| || ||||| || || || Sbjct 582 GTCCAACCCGATCTTCATCCAGCAAGGCGCCGTATGGACGTCCGCCGGCGTCACTGCTGG 523 Query 420 GATCG 424 |||| Sbjct 522 CATCG 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1252738221056