Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001354.1 Length=381 Score E Sequences producing significant alignments: (Bits) Value seq52860 318 1e-84 >seq52860 Length=3342 Score = 318 bits (352), Expect = 1e-84 Identities = 298/379 (79%), Gaps = 0/379 (0%) Strand=Plus/Minus Query 1 CGAGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGG 60 |||||||||||||||||||||| ||||| | |||||| |||||| |||| ||||||| | Sbjct 2334 CGAGCAGTTCCACCGCGCGCAGGTCGCCGGTCGAATCATGGCCGCTGGGGATCAGGTCGC 2275 Query 61 CGTCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGT 120 | || |||| ||| ||| || ||||||| | |||||| ||||| || ||||| || | Sbjct 2274 CTTCGAGCAAGGCATCGAGGAATTCGGGGTTCACGCCGTAACGGCAGCGATAACCTTCCT 2215 Query 121 GGATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGT 180 | | |||||| || | ||||||| ||| || || ||||| | |||||||||||| ||| Sbjct 2214 GCACATCCAGGGTGTCATAGGCCTCGGCGATCCGGGTGTAGGGCGCCAGGCGCACGCTGT 2155 Query 181 CGTTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCA 240 || | | |||||||||| ||| ||| |||| ||| |||||||||| || | ||| Sbjct 2154 CGGTGGCCTCCACCAGGGCACAGCTCAGTGGCGCGATCACGGCGCGCTTGGCCTGCGGCG 2095 Query 241 TTAATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGG 300 | |||||| |||| |||||| ||||||||| |||| || || ||||||||||||| Sbjct 2094 CGAGTTCGCCATGCTCGGCATCCTTCCAGCCGAGGACATTGCGTGCGTATTCCAGCACGG 2035 Query 301 CATGTTGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTA 360 |||| |||||||||||||| || |||||||| || || | ||| ||||||||||| || | Sbjct 2034 CATGCTGAAAACCGCCGCACGTGCCGAGGAACGGTCGGCGTTGCTCGCGGGCAAACCGGA 1975 Query 361 TCGCGCGCAGGGCGCCGTC 379 |||| |||| |||||||| Sbjct 1974 TCGCCCGCATTGCGCCGTC 1956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115320508032