Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001354.1
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
seq52860 318 1e-84
>seq52860
Length=3342
Score = 318 bits (352), Expect = 1e-84
Identities = 298/379 (79%), Gaps = 0/379 (0%)
Strand=Plus/Minus
Query 1 CGAGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGG 60
|||||||||||||||||||||| ||||| | |||||| |||||| |||| ||||||| |
Sbjct 2334 CGAGCAGTTCCACCGCGCGCAGGTCGCCGGTCGAATCATGGCCGCTGGGGATCAGGTCGC 2275
Query 61 CGTCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGT 120
| || |||| ||| ||| || ||||||| | |||||| ||||| || ||||| || |
Sbjct 2274 CTTCGAGCAAGGCATCGAGGAATTCGGGGTTCACGCCGTAACGGCAGCGATAACCTTCCT 2215
Query 121 GGATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGT 180
| | |||||| || | ||||||| ||| || || ||||| | |||||||||||| |||
Sbjct 2214 GCACATCCAGGGTGTCATAGGCCTCGGCGATCCGGGTGTAGGGCGCCAGGCGCACGCTGT 2155
Query 181 CGTTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCA 240
|| | | |||||||||| ||| ||| |||| ||| |||||||||| || | |||
Sbjct 2154 CGGTGGCCTCCACCAGGGCACAGCTCAGTGGCGCGATCACGGCGCGCTTGGCCTGCGGCG 2095
Query 241 TTAATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGG 300
| |||||| |||| |||||| ||||||||| |||| || || |||||||||||||
Sbjct 2094 CGAGTTCGCCATGCTCGGCATCCTTCCAGCCGAGGACATTGCGTGCGTATTCCAGCACGG 2035
Query 301 CATGTTGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTA 360
|||| |||||||||||||| || |||||||| || || | ||| ||||||||||| || |
Sbjct 2034 CATGCTGAAAACCGCCGCACGTGCCGAGGAACGGTCGGCGTTGCTCGCGGGCAAACCGGA 1975
Query 361 TCGCGCGCAGGGCGCCGTC 379
|||| |||| ||||||||
Sbjct 1974 TCGCCCGCATTGCGCCGTC 1956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1115320508032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |