Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq130631 100 2e-19 seq131474 91.5 9e-17 seq125715 75.2 7e-12 seq111469 75.2 7e-12 >seq130631 Length=123029 Score = 100 bits (110), Expect = 2e-19 Identities = 77/86 (90%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| || |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 91452 TCCGAA-GTCCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 91508 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 91509 GGCAGGGACGTAAT-CAACGCAAGCT 91533 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 101096 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 101153 Query 122 GCT 124 ||| Sbjct 101154 GCT 101156 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 104870 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 104927 Query 122 GCT 124 ||| Sbjct 104928 GCT 104930 >seq131474 Length=103143 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | ||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 45202 TCCGAAGGC-CTCACCGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 45258 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||| ||| Sbjct 45259 GGCAGGGACGTAAT-CAACGCATGCT 45283 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 34613 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 34670 Query 122 GCT 124 ||| Sbjct 34671 GCT 34673 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 69300 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 69357 Query 122 GCT 124 ||| Sbjct 69358 GCT 69360 >seq125715 Length=54709 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 20611 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 20668 Query 122 GCT 124 ||| Sbjct 20669 GCT 20671 >seq111469 Length=30026 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 10369 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 10426 Query 122 GCT 124 ||| Sbjct 10427 GCT 10429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300426417680