Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq39951 511 9e-143 >seq39951 Length=2641 Score = 511 bits (566), Expect = 9e-143 Identities = 318/340 (94%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1502 CGACTTGAGCTTGCTGGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 1443 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120 |||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||| Sbjct 1442 GGTGGCAACAAACGCCACGGCAATGCCGCTGCCCAGTTGTGAAGGGTCGGCCAAGTTGCC 1383 Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180 |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1382 CATCACATGGATCAGGCCCATTACCGCACCGATGATGCCAATGGTCGGCGCGTAGCCGCC 1323 Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240 ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1322 CATGCTTTCGTAGACTTTGGCGGCGTTGATGTCGCGGCTTTCCTGGGT-GTAGAAATCCA 1264 Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300 ||||| || ||||||||||||||||| |||||||| || ||||||| ||| ||||||| Sbjct 1263 CTTCCAAAATGCTGCGAATCGCTTCCGGTTCGGCGCCATCTACCAGCAATTGAAGGCCTT 1204 Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 | |||||||||||||||||||||||||||||||||||||| Sbjct 1203 TTCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987490077312