Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001429.1
Length=150
Score E
Sequences producing significant alignments: (Bits) Value
seq115404 78.8 7e-13
seq59886 73.4 3e-11
seq50477 73.4 3e-11
>seq115404
Length=34367
Score = 78.8 bits (86), Expect = 7e-13
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 4 ACTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATT 61
|||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 102 ACTCGGTCTTTCAAATAAACCGAGGTGATGCCATCGCAGGCAAGCCAGCTCCCACATT 159
>seq59886
Length=4419
Score = 73.4 bits (80), Expect = 3e-11
Identities = 44/45 (98%), Gaps = 1/45 (2%)
Strand=Plus/Minus
Query 106 CTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 447 CTTTTTCCAACCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 404
>seq50477
Length=3153
Score = 73.4 bits (80), Expect = 3e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 2 CGACTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACA 59
|| ||||| || ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2770 CGCCTCGGTGCATCAGTGACACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACA 2713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 383523086400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |