Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001429.1 Length=150 Score E Sequences producing significant alignments: (Bits) Value seq115404 78.8 7e-13 seq59886 73.4 3e-11 seq50477 73.4 3e-11 >seq115404 Length=34367 Score = 78.8 bits (86), Expect = 7e-13 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 4 ACTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATT 61 |||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 102 ACTCGGTCTTTCAAATAAACCGAGGTGATGCCATCGCAGGCAAGCCAGCTCCCACATT 159 >seq59886 Length=4419 Score = 73.4 bits (80), Expect = 3e-11 Identities = 44/45 (98%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 106 CTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150 ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 447 CTTTTTCCAACCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 404 >seq50477 Length=3153 Score = 73.4 bits (80), Expect = 3e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2 CGACTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACA 59 || ||||| || ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 2770 CGCCTCGGTGCATCAGTGACACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACA 2713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383523086400