Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001435.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value seq78422 601 1e-169 >seq78422 Length=10115 Score = 601 bits (666), Expect = 1e-169 Identities = 399/443 (90%), Gaps = 0/443 (0%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||| || Sbjct 6332 TCGATGTACGGCGGTGGTTTTGCGACCGTTCCGGCCTACCTGGCCGACCTGTTCGGCACC 6391 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 |||||||| || |||||||| ||||||||||||||||||||||| || || ||||| || Sbjct 6392 CAGATGGTTGGCGCGATCCATGGTCGCCTGCTGACCGCCTGGGCTGCAGCTGGCGTGCTG 6451 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 |||||||| |||||||||| || || || || ||| |||||||||||||||||||||| Sbjct 6452 GGCCCGGTACTGGTGAACTACCTTCGCGAATACCAGCTGAGCATCGGCGTTGAACGCGCC 6511 Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGC 240 |||||||| |||||||| |||||||||||||| |||||||||||| |||| ||||||||| Sbjct 6512 GCGGCCTACGACATCACGTTGTACATCCTCGCCGGCCTGCTGGTGTTGGGTTTCATCTGC 6571 Query 241 AACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGCC 300 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 6572 AACCTGCTGGTTCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCTGAACTGGCCGCC 6631 Query 301 GAGCAAGCGCTGGGGCATGACAAAGGCGCCGACGCCAGCACGTCCCTGGAGTGGAAAGCC 360 || || |||||||| || ||||||||||| ||||| | || ||||||||||||||||| Sbjct 6632 GAACAGGCGCTGGGCCACGACAAAGGCGCGGACGCGACGACTTCCCTGGAGTGGAAAGCT 6691 Query 361 GCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTGGCG 420 || || || || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 6692 GCCCCTGGCACCGTGCCTTTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTGGCG 6751 Query 421 TGGGGTGTGTGGGTGACCCTGCA 443 ||||||||||||||||||||||| Sbjct 6752 TGGGGTGTGTGGGTGACCCTGCA 6774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1773647226240