Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq25710 286 4e-75 >seq25710 Length=1663 Score = 286 bits (316), Expect = 4e-75 Identities = 182/198 (92%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| ||||| |||||||| || || ||||||||||||||||||| ||||||||||| Sbjct 1150 CGACCTTCTTGCTGGCCTTCAAACGACGACCGGCGTTGTTGATCGCCAACTCCGCCAGGG 1209 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1210 CCAGGCCCAATTCAGGATGCTCGTTGAGCCACAGGCTGAAGGCATCCTTGACCACGCCTG 1269 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180 ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct 1270 AGACAAACGCCGCCGCCTCGCGGGACGACAGGCGCTCTTTGGTCTGGCCGGAGAACTGCG 1329 Query 181 GTTCCTGCATCTTCATCG 198 | |||||||| ||||||| Sbjct 1330 GCTCCTGCATTTTCATCG 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533714171748