Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001445.1 Length=285 Score E Sequences producing significant alignments: (Bits) Value seq34786 342 8e-92 >seq34786 Length=2444 Score = 342 bits (378), Expect = 8e-92 Identities = 243/283 (86%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62 || || | || || |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 341 AGATGATCGGTTCCCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAAGTGGGCG 282 Query 63 AGGAGCAGATCCTGCTCGGCATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGA 122 |||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 281 AGGAGCAGATCCTGCTGGGCATCACGCCCGGTCGCATCACTCCGCTGCATGTGCTCAAGA 222 Query 123 CCCCGGTGGACGCGGTCAAGACCGAAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGG 182 |||||||| || || | ||| | | ||||||||| |||||||||||| Sbjct 221 CCCCGGTGAGCGTGGACCAGAGCCAGTCCGCCACGCCAGAATTCGCCCAGCGCCTGATGG 162 Query 183 AGTTGCTGGGCAAGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCT 242 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 161 AGTTGCTGGGCAAGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCT 102 Query 243 GTTGCTGGCCGCACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285 |||||||||||| || |||| | |||||||||||||||||| Sbjct 101 GTTGCTGGCCGCGCCACTGGCGTTTGGCGCCGACCCGTTGTCG 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 811756883976