Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001448.1 Length=310 Score E Sequences producing significant alignments: (Bits) Value seq30946 450 2e-124 >seq30946 Length=2255 Score = 450 bits (498), Expect = 2e-124 Identities = 286/309 (93%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 1 CGACCTGTTTGACAGTGACGCCCGGGCGTGGGGCGAGCTTGTCGGTATTGCGGGCGATGG 60 |||| |||||||| |||||||| ||||| ||| ||||||||||||||||| ||||||| Sbjct 1115 CGACTTGTTTGACGGTGACGCCAGGGCGCATGGCCAGCTTGTCGGTATTGCGTGCGATGG 1174 Query 61 CGGTGACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGG 120 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1175 CGGTGACGGTGTGACCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCAG 1234 Query 121 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTTCGTTAAGGGTTTAAAACC 180 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 1235 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTACGTT-AGGGTTTGAAACG 1293 Query 181 ATTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTGAGTTCCAGCGAGCTTTCGTCG 240 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1294 GTTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTCAGTTCCAGCGAGCTTTCGTCG 1353 Query 241 GCGAGGGTCGGGTAACGCTTTTTCATGGCCGCGATCAGGGCCGCGGAATCCTTCGCTTTG 300 |||||||| |||||||||||||||||||||||||||||||| | ||||||||| || ||| Sbjct 1354 GCGAGGGTGGGGTAACGCTTTTTCATGGCCGCGATCAGGGCGGTGGAATCCTTGGCCTTG 1413 Query 301 GCCGTCTCG 309 || |||||| Sbjct 1414 GCGGTCTCG 1422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 888421493504