Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq63171 497 2e-138 >seq63171 Length=5006 Score = 497 bits (550), Expect = 2e-138 Identities = 347/395 (88%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1440 CGACGGCACCGGCCCGGTGTGGAAGGGCGGACTGTTCCCGTTCCTGTTCATCACCATTGC 1381 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||| ||||||||||||||||| |||||||||||||||||||| ||||| || || | Sbjct 1380 CTGTGGTGCGGTCTCGGGTTTCCACGCGCTGATCTCCTCGGGCACTACGCCGAAACTGTT 1321 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | | || | | | || || ||||||||||||||||||||| |||||||||||||||| Sbjct 1320 GGATAACGAAACCAACGCGCGCTACATCGGTTACGGCGGCATGTTGATGGAGTCGTTCGT 1261 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 1260 GGCCATCATGGCCATGGTTGCCGCTTCGGTGATCGAGCCTGGCGTGTACTTCGCCATGAA 1201 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||||||| | || |||| || ||||| || ||||||||||| |||||||| || Sbjct 1200 CAGCCCGGCTGCCGTGGTGGGCAGTGATGTGGTGACGGTGGCGCAAACTGTCAGCAGCTG 1141 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||||||||||||||| || || || ||| |||| || |||||| | |||||||||||||| Sbjct 1140 GGGCTTTGCCATTACTCCGGAAGCACTGACGGCGGTCGCCCACGACATCGGTGAAACCAC 1081 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||| ||||||||||| || ||||| |||| Sbjct 1080 CATCCTGGCGCGTGCCGGCGGTGCACCGACCCTGG 1046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1160061158784