Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001488.1 Length=376 Score E Sequences producing significant alignments: (Bits) Value seq110703 197 3e-48 >seq110703 Length=29075 Score = 197 bits (218), Expect = 3e-48 Identities = 249/342 (73%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 8 TCAAGGCCCAGGGTGGTTTGCTGGTGAAGAACTAGGTCTATGGTCAGACCTTCTCCGTTG 67 |||||||| |||| |||||| |||||||||| | | ||| || ||||| || | Sbjct 7292 TCAAGGCCGAGGGCGGTTTGTTGGTGAAGAATGAAGCCTACGGCGGCGCCTTCAATGTGG 7233 Query 68 ATCTCCTGACCCACGCACACCTGATCCAGCTGAAATCCAAAATGATCGGCGTCTGCGATG 127 | | ||||| | || ||||||||||||||||||| ||||||| |||||| |||| | Sbjct 7232 ACCGCCTGATGCTGGCGGACCTGATCCAGCTGAAATCGAAAATGAACGGCGTGGGCGAAG 7173 Query 128 GCCGCGTGCTGCCTCCCCGGCAACCCCAGCTGCACGTGCCGGCCACCTGGACGCCGGGCC 187 ||| ||||||| |||| | || || || | ||||| | | |||| ||||||||| Sbjct 7172 GCCAGGTGCTGCAGACCCGAGAGGCCGAGGTGAAACTGCCGACGAGCTGGGCGCCGGGCC 7113 Query 188 AGACGCTGACGGCTCGATTGCACATGGTCAACCTGCCCGCCCGGCCCACCGACAAGCCCA 247 | || |||| || | || | |||| ||| |||| | | ||| |||||||| || Sbjct 7112 AAACCCTGAGTGCGCACCTGAAGATGGCCAATGTGCCGGTCAAGCCTACCGACAAACCGG 7053 Query 248 TCGAAACGTCGTTGACCTGCACGATTGGCGCACGCATTCCGGCACGCCAGGTGTTTGCCG 307 ||||||| | |||||||||| | | |||| ||| | ||||| ||| |||||||||| Sbjct 7052 TCGAAACCACCTTGACCTGCAAGGTGGGCGAGCGCTTCCCGGCGCGCAAGGTGTTTGCGT 6993 Query 308 CGTTGACGGGCGACGCGATCAAACTGGCCTGCGACCAGGGCG 349 ||||||||||||| || || || ||||||| |||| || Sbjct 6992 CGTTGACGGGCGATGCCATTCGGTTGACCTGCGAGCAGGACG 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099341704192