Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001493.1 Length=345 Score E Sequences producing significant alignments: (Bits) Value seq105927 118 2e-24 >seq105927 Length=24763 Score = 118 bits (130), Expect = 2e-24 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 121 AGGTCGGGGTTGAGCGTGGCGAGGAATTGCAGGCGCACGGCTTTGTTGTCGACGCGGTCG 180 |||||| ||||||| ||||| |||||||||||||||||| || |||| |||| | || Sbjct 14531 AGGTCGTCGTTGAGCTGGGCGAAGAATTGCAGGCGCACGGCCTTTTTGTTGACGTCGCCG 14590 Query 181 TAATCCTTGTCGTCGTAGACGTTCTTGATAAAACCGTCGCGCTCCTTGGAATACAGCGAC 240 || | ||||| | |||||| || ||||||||||| | ||| |||||||| Sbjct 14591 TAGGTGTGATCGTCCACCAGGTTCTTCTGGAATCCGTCGCGCTCTTCGGAGTACAGCGAG 14650 Query 241 ACGCGGGCGGCCAGGCGGTCTTCCACCAGGGTGCCGCCGATGGCGCCATTGACGATTTTC 300 | || ||||| || || || ||||| | ||||| | ||||| ||| ||| Sbjct 14651 ATCCGCGCGGCGAGTTTTTCATCGACCAGCGCACCGCCCAACGCGCCGCTGAGGATGCGT 14710 Query 301 TCGTTCTTGCTGCCGTAGCCAAGGGTGGCGTAGCCGTCGTTCTCG 345 |||||||||||||| |||| | ||| || | |||||| | ||| Sbjct 14711 TCGTTCTTGCTGCCAAAGCCGATCGTGCCGAAACCGTCGGTGTCG 14755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1000273120384