Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001545.1 Length=359 Score E Sequences producing significant alignments: (Bits) Value seq88939 495 8e-138 >seq88939 Length=14239 Score = 495 bits (548), Expect = 8e-138 Identities = 324/357 (91%), Gaps = 0/357 (0%) Strand=Plus/Minus Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62 || |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| Sbjct 7696 AAATTCGGCACCTGGCGCAGCGCTGGCAAAATGTTCACGTTCGGCGAGGCTTTGGAATAC 7637 Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122 |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 7636 ATGTAGCACACGTAGCCGCTGCAAAAACCGCAGAAGTTGCAAGGGCCCATCTGGGCGCCA 7577 Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182 |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7576 TAGGGGTTGGTGTAGGGCCCCGAGGTGTTGGCAGACGGCAGGTTGTAGGGTTTGTAACCC 7517 Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242 || || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7516 ACTTCACTAGCCGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAC 7457 Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302 |||||||||||||| ||||| || ||||| |||||||| || || |||||||| |||||| Sbjct 7456 GGGAACGGGTTGGAACGGTCGGGCGCATAGGGGTTGCCGCCACGGCCTTCGCCGACCAAC 7397 Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359 |||||||| ||||||||||| || || || ||||| ||||||||||||||||||||| Sbjct 7396 TGGCCTTTCACGGTCCAGGCTTGCCCAGAAGTGCCAAAGACTTTTTCCGCGTAGTCG 7340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045013771136