Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001569.1 Length=509 Score E Sequences producing significant alignments: (Bits) Value seq55180 170 6e-40 >seq55180 Length=3596 Score = 170 bits (188), Expect = 6e-40 Identities = 124/144 (86%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 335 CAGGAAACCAACACCAAGCTGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTC 394 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1 CAGGAAACCAACACCAAGCTGGTCAGCGACGTCCTCAGCGATGCGTTGACCCGCCTGTTC 60 Query 395 AAGGACCCAAGCATCGGCCAACTGCTCAGCGCGCAATAAGCCGCTCACaaaaaaaCCGGG 454 ||||||||||||||||| |||||||| |||||||| | ||| ||||| ||||| Sbjct 61 AAGGACCCAAGCATCGGTTCCTTGCTCAGCTCGCAATAACCGATTCAACAAAAAGCCGGG 120 Query 455 CTCATCGCTGAGCCCGGttttttt 478 |||| | ||||||||| |||||| Sbjct 121 CTCAGTGATGAGCCCGGCTTTTTT 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1524377886336