Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001581.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value seq74359 205 4e-50 >seq74359 Length=8519 Score = 205 bits (226), Expect = 4e-50 Identities = 296/413 (72%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298 |||||| | ||||| || ||| |||| ||| |||| ||||||||||||| | || | Sbjct 1104 CCACGGTCTCAGCCAGAGTGCCATGCCCAGCAATACCACCGCGCCGGCCAGGGTGCTTAG 1045 Query 299 CCCCAACTGCCACCCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAG 358 ||||| ||| || ||| | | | ||| |||| ||||||||| |||| ||| Sbjct 1044 CCCCAGTTGCAGCCACACGTCTTCAATCCGAAACAGCGCCAACGCCGCCACGCCCATCAG 985 Query 359 CACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGCGGTG 418 || |||| | ||| | | | |||| ||| |||||||| | |||| || Sbjct 984 CAGGGCGCTGAGCAGCCAGTTCCGCGCCCAGGGCAGGGCGCCGAGCAAGGCCTGGCGTTG 925 Query 419 CATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCGGCAG 478 |||||||| || || | || || ||| |||||||| | |||||||| ||| Sbjct 924 CATCAGCAGCAGCGCGGTGCAGATCACCCCGGCCAGTGCCGCCAACGGGATCCCCGCCAG 865 Query 479 GCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCG--TTGACCAGGCTGCCCAGCAG 535 ||||| |||| | |||||||| | |||| || || |||||||||||||| ||||| Sbjct 864 GCCGAACACAA-ACGGCAGCACACCGAGCA--GCAGCACATTGACCAGGCTGCCGAGCAG 808 Query 536 TTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCATCGC 595 |||||| || ||| |||||||||| ||| || ||||||||||| ||||||| || Sbjct 807 TTCGCAGCGCAGTGGCTGGCGCGTGTCCCCGGCCGCGTAGGCATAGCGCGCGAGCAAAGC 748 Query 596 GTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648 |||||||||||||| ||||| ||| ||| ||||||||||||||| ||||| Sbjct 747 ATTCCAGGCGCCAAATACCAGCGGCACGGCAAACCAGGCCAGCAGCAGCGGCA 695 Score = 89.7 bits (98), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 5/129 (4%) Strand=Plus/Minus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| || ||||| | ||||| | ||| |||||||||| |||||||||||||| ||||| Sbjct 6504 CGAGAAGACCGTACCGCCGGATACCCTCGACCTGAAGGCATTCTTCAGCGCCATCGACCA 6445 Query 61 GATGCCTCAGGCGGA-AAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCCTGTTCCAGCCG 119 |||||| ||| || |||| ||| || ||||| || ||||| || || | | |||| Sbjct 6444 GATGCCGATGGCCGAGAAAGAAGC-CGCTGCACCGGCCGAGCCTGAACCCG---CTGCCG 6389 Query 120 CGCCAGCGG 128 | ||||||| Sbjct 6388 CACCAGCGG 6380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2003658939084