Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001589.1 Length=431 Score E Sequences producing significant alignments: (Bits) Value seq77816 511 1e-142 >seq77816 Length=9881 Score = 511 bits (566), Expect = 1e-142 Identities = 367/431 (85%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||| ||||||||||||||| | | || ||||| || ||||||||||| Sbjct 5195 CGACAGCCATATCAAAAGCCTGCGCAGCAAGTTGCGCAGCGTGGCCGCCGATGCCGAGCC 5254 Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120 ||||||||||||||||||||| ||||||||||||| Sbjct 5255 GATCCAGACCCATCGCGGCCTCGGCTACAGCTACAGCCCGAGCAATAGCTGATGCGCCTG 5314 Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5315 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 5374 Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240 | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 5375 AGCACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAGTCCACCGAAGAAACCTTGGTG 5434 Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300 ||||||||||||||||| || || ||| |||| ||||| || ||||||||||||||| Sbjct 5435 GACACCGCCAACCTGCTAGCCGAGATCGTGCGCAATGACGTGAAGAACGGCACCCTCGGC 5494 Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCCGGGAGCGACGATC 360 || ||||| ||||| || |||||||||| ||||||| ||||||||||||||||| ||| Sbjct 5495 CAAAGCCACTGGCCGGAGCTGCTCAAGGCGTATGGCAACCGCCAGCCGGGAGCGACCATC 5554 Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420 ||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| | Sbjct 5555 TGGGGTTTGCCGAAGAACCAGGTCAATCATCGCATCTACGTGACCGATGCCAAGGGCACG 5614 Query 421 GTATTGCTCGA 431 || |||||||| Sbjct 5615 GTGTTGCTCGA 5625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1275108546432