Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001603.1 Length=479 Score E Sequences producing significant alignments: (Bits) Value seq39951 719 0.0 >seq39951 Length=2641 Score = 719 bits (796), Expect = 0.0 Identities = 447/478 (94%), Gaps = 1/478 (0%) Strand=Plus/Minus Query 1 CGAGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACA 60 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 942 CGAGGTAGTTGCCGCCGATGATCGCGACAAACGCCATGATGATACCGATCAGGCTCAAAA 883 Query 61 CATCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGC 120 ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 882 CATCCATCAGAGGCAAGCCTCCACCAGATGCTTGCCGATGTCGTCCAGACTGTAGACGGC 823 Query 121 GTCGGCCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTC 180 ||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 822 GTCAGCCAAGTCGGCCTTGACGATGGCCATGGGCATGCCGTAGATCACGCAGCTGGCCTC 763 Query 181 GTCCTGGGCCCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGGCCGTC 240 ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| Sbjct 762 GTCCTGGGCCCAGATGGCGCTGCCGCCCTGCTTGAGCAGGCGCGCGCCCTCACGGCCGTC 703 Query 241 GGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGGCCG 300 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 702 GGCGCCCATGC-CGGTGAGCACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCTGCCG 644 Query 301 AACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGATTT 360 |||| ||||||||||||||||| || |||||||||||||| || || ||||||||||||| Sbjct 643 AACCAAAGGTGATGTCCACGCATGGTTTGTAGTTCAGGCGCTCGTCGCCCGGCAGGATTT 584 Query 361 TGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCAGGC 420 |||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| Sbjct 583 TGATCGCGCCACGGCCGTCCACCATCATTTGCTTGCCACCCGGCGCCAGCAACGCCAGGC 524 Query 421 CAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGTC 478 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 523 CAGGACGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTC 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1428505063296