Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001614.1 Length=458 Score E Sequences producing significant alignments: (Bits) Value seq66176 302 1e-79 >seq66176 Length=5703 Score = 302 bits (334), Expect = 1e-79 Identities = 366/484 (76%), Gaps = 41/484 (8%) Strand=Plus/Minus Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60 |||||||||||||| ||||||||| |||| |||| |||||||||||| ||| | | || Sbjct 3932 TCGAATTTAAACCCTGGGCCGCAGTGTTCACGCAT-GAAGCGGCGCACGTTTT-GAGTGT 3875 Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120 |||| |||| |||| || || ||| ||||||||| ||| || ||||||||||||||| Sbjct 3874 TTTT-GTAGTGTGGGGTTACCGG-AGT-GGCGCGGGT-GAGTGT-GTCGCTGTGCCAGTC 3820 Query 121 AAAATCCATTTTAGTCGCTCGGGC---GCGTTGTTTGGGCGATAACATAGCGATGTGCCA 177 |||||||||||| ||| ||||||| || |||| ||| || ||||||||||||| | Sbjct 3819 AAAATCCATTTT-GTCTCTCGGGCAGTGCCAGGTTTCGGCAGTAGCATAGCGATGTGCTA 3761 Query 178 TCTAGC-CAGGAAGAATCTCCCAGGATTATTT-ACTGTGTTAGGACGTCATATATGACCA 235 || || ||||||| | | ||||| | | ||||| |||| || |||| | Sbjct 3760 -CTTGCACAGGAAGCGAGGC--ATGATTAGATCAGCGTGTTGGGACATCGTATAAGT--- 3707 Query 236 GTCGC-------------CGCTATCACGCCTAATAATTTCAAGATATTTCAAAATTTCAC 282 |||| ||| | | ||||||| |||||||||||||| ||||||||| Sbjct 3706 -TCGCGTGTGTTTTATATCGCCTTAAAGCCTAATCTTTTCAAGATATTTCGAAATTTCAC 3648 Query 283 TTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGTATTCACC 342 |||| ||| | ||||| ||||||||||||||||||| |||||||||| || Sbjct 3647 TTTCCTTACCCACCCGAAATATTGCATGGTTGTACGACGACTTAAGCTGTCGTGCCAGCC 3588 Query 343 CC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTTTCTGTGC 400 || ||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||| Sbjct 3587 CCCAACAACAATAAGGAAACACCCATGCAAAACGTCAAAGTGCTGATCGGATTTCTGTGC 3528 Query 401 CTGTTCAGCGGCTATGTGGCTGCC------GCTCCCGCGGAAAAGGACGTGGCCCAAGCG 454 ||||||| ||| ||||| || ||| || || || |||||||| ||||| |||||| Sbjct 3527 CTGTTCACCGGTTATGTCGCAGCCGCGCCTGCCCCTGCCGAAAAGGATGTGGCACAAGCG 3468 Query 455 GTCG 458 |||| Sbjct 3467 GTCG 3464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1361394087168