Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001614.1
Length=458
Score E
Sequences producing significant alignments: (Bits) Value
seq66176 302 1e-79
>seq66176
Length=5703
Score = 302 bits (334), Expect = 1e-79
Identities = 366/484 (76%), Gaps = 41/484 (8%)
Strand=Plus/Minus
Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60
|||||||||||||| ||||||||| |||| |||| |||||||||||| ||| | | ||
Sbjct 3932 TCGAATTTAAACCCTGGGCCGCAGTGTTCACGCAT-GAAGCGGCGCACGTTTT-GAGTGT 3875
Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120
|||| |||| |||| || || ||| ||||||||| ||| || |||||||||||||||
Sbjct 3874 TTTT-GTAGTGTGGGGTTACCGG-AGT-GGCGCGGGT-GAGTGT-GTCGCTGTGCCAGTC 3820
Query 121 AAAATCCATTTTAGTCGCTCGGGC---GCGTTGTTTGGGCGATAACATAGCGATGTGCCA 177
|||||||||||| ||| ||||||| || |||| ||| || ||||||||||||| |
Sbjct 3819 AAAATCCATTTT-GTCTCTCGGGCAGTGCCAGGTTTCGGCAGTAGCATAGCGATGTGCTA 3761
Query 178 TCTAGC-CAGGAAGAATCTCCCAGGATTATTT-ACTGTGTTAGGACGTCATATATGACCA 235
|| || ||||||| | | ||||| | | ||||| |||| || |||| |
Sbjct 3760 -CTTGCACAGGAAGCGAGGC--ATGATTAGATCAGCGTGTTGGGACATCGTATAAGT--- 3707
Query 236 GTCGC-------------CGCTATCACGCCTAATAATTTCAAGATATTTCAAAATTTCAC 282
|||| ||| | | ||||||| |||||||||||||| |||||||||
Sbjct 3706 -TCGCGTGTGTTTTATATCGCCTTAAAGCCTAATCTTTTCAAGATATTTCGAAATTTCAC 3648
Query 283 TTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGTATTCACC 342
|||| ||| | ||||| ||||||||||||||||||| |||||||||| ||
Sbjct 3647 TTTCCTTACCCACCCGAAATATTGCATGGTTGTACGACGACTTAAGCTGTCGTGCCAGCC 3588
Query 343 CC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTTTCTGTGC 400
|| ||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 3587 CCCAACAACAATAAGGAAACACCCATGCAAAACGTCAAAGTGCTGATCGGATTTCTGTGC 3528
Query 401 CTGTTCAGCGGCTATGTGGCTGCC------GCTCCCGCGGAAAAGGACGTGGCCCAAGCG 454
||||||| ||| ||||| || ||| || || || |||||||| ||||| ||||||
Sbjct 3527 CTGTTCACCGGTTATGTCGCAGCCGCGCCTGCCCCTGCCGAAAAGGATGTGGCACAAGCG 3468
Query 455 GTCG 458
||||
Sbjct 3467 GTCG 3464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1361394087168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |