Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001616.1 Length=254 Score E Sequences producing significant alignments: (Bits) Value seq66824 340 3e-91 >seq66824 Length=5882 Score = 340 bits (376), Expect = 3e-91 Identities = 227/253 (90%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60 ||||||| || |||||||| || ||||||||||||||||| || ||||||||||| |||| Sbjct 832 CGAACACGTGATTGAGCAGGAAGTCGCGGCTCAGCGGGCGATTGGGGTGCTGCAACAGCA 891 Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120 |||||| | |||||||||| || ||||||||||||||||||||||| |||||||| || | Sbjct 892 GGCGCAACACGCGGTAATCGGAGTTGCCCAGGCTGACCACCACACCCTCCGGCGACAGTA 951 Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180 | || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 952 ACTGCCGCGCCCGCGTGTCGAGCTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 1011 Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240 | ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||| || Sbjct 1012 GGCGCGCGCGGTCGGGAAAGCTCTGCACCCGGCGCAACACCACCTTGATCCGCACCAGCA 1071 Query 241 GTTCCCGCGGGTC 253 | || |||||||| Sbjct 1072 GCTCACGCGGGTC 1084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712684193412