Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001645.1 Length=355 Score E Sequences producing significant alignments: (Bits) Value seq53979 439 5e-121 >seq53979 Length=3451 Score = 439 bits (486), Expect = 5e-121 Identities = 294/328 (90%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62 ||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1220 GACGAACTGGCACCGCAGCATGTGAAAGTGCCGTCGGGTTCGTCAGTGCGTTTGGACTAC 1161 Query 63 AGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACA 122 |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| Sbjct 1160 AGCGAACAGCCGCCGATCCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCCGACACC 1101 Query 123 CCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGG 182 ||||||||||| || |||||||| ||||| ||| |||| ||||||||||| |||| || Sbjct 1100 CCGCGCATTGCTGGAGGGCGCCAAGTGGTGAAGCTGCATTTGCTGTCCCCGGCGCGTCGG 1041 Query 183 CCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAG 242 |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || ||| Sbjct 1040 CCGGTGCAGGTGACGCAGGACCTGGCGAACTTCTGGCGCAGTACCTATGCCGAAGTTAAG 981 Query 243 AAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAA 302 |||||| | ||||||||||| |||||||| |||||||||||||| ||| ||||||| || Sbjct 980 AAGGATTTAAAGGGGCGGTACCCGAAGCACTATTGGCCGGATGACCCGCTGGTGGCGGAG 921 Query 303 GCGACGGCGCGGATCAAACCCCGTAAGT 330 |||||||||||||||||||| || |||| Sbjct 920 GCGACGGCGCGGATCAAACCGCGCAAGT 893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1032230728064