Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001671.1 Length=306 Score E Sequences producing significant alignments: (Bits) Value seq48667 426 3e-117 >seq48667 Length=3036 Score = 426 bits (472), Expect = 3e-117 Identities = 278/306 (91%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60 |||||| |||||||| ||| |||||||| || | ||| || || |||||||||| ||||| Sbjct 164 CGAGGGCCTCAAGCGTGACAACCTGCTGAGCGCTACCGCCGGCATCAAGGTGGAACTCTA 223 Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCT 120 || ||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||||| Sbjct 224 CGGATCGCTGGGCGCCACCGGCAAAGGCCACGGCAGTGACAAGGCCGTGTTGCTGGGCCT 283 Query 121 GGAAGGCGAACACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGAT 180 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 284 GGAAGGCGAACACCCGGACACCGTGAATACCGAAACCGTGGCCACCCGCCTGGCGCAGAT 343 Query 181 GCGCAAGGACGGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGA 240 |||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 344 GCGCAAGGACGGCCACTTGAATTTACTCGGCGAACACAGCATTGCGTTCAACGAGAAAGA 403 Query 241 ACACCTGGCGATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGC 300 ||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 404 ACACCTGGCGATGATTCGCAAACCCCTCGCCTACCATCCCAATGGCATGATTTTCCGTGC 463 Query 301 TTTCGA 306 ||||| Sbjct 464 CTTCGA 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 875638450432