Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001671.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
seq48667 426 3e-117
>seq48667
Length=3036
Score = 426 bits (472), Expect = 3e-117
Identities = 278/306 (91%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60
|||||| |||||||| ||| |||||||| || | ||| || || |||||||||| |||||
Sbjct 164 CGAGGGCCTCAAGCGTGACAACCTGCTGAGCGCTACCGCCGGCATCAAGGTGGAACTCTA 223
Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCT 120
|| ||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 224 CGGATCGCTGGGCGCCACCGGCAAAGGCCACGGCAGTGACAAGGCCGTGTTGCTGGGCCT 283
Query 121 GGAAGGCGAACACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGAT 180
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 284 GGAAGGCGAACACCCGGACACCGTGAATACCGAAACCGTGGCCACCCGCCTGGCGCAGAT 343
Query 181 GCGCAAGGACGGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGA 240
|||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 344 GCGCAAGGACGGCCACTTGAATTTACTCGGCGAACACAGCATTGCGTTCAACGAGAAAGA 403
Query 241 ACACCTGGCGATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGC 300
||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||
Sbjct 404 ACACCTGGCGATGATTCGCAAACCCCTCGCCTACCATCCCAATGGCATGATTTTCCGTGC 463
Query 301 TTTCGA 306
|||||
Sbjct 464 CTTCGA 469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 875638450432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |