Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq32164 379 4e-103 >seq32164 Length=2323 Score = 379 bits (420), Expect = 4e-103 Identities = 267/305 (88%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 2 GAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCT 61 ||||||||| || | |||||||| || ||||| |||||||| |||||||| ||||| Sbjct 1570 GAGCTGGATGCGGTGGTTGAAATCGCGGTGGAAGATGAAGAGATCGTCCAGCGCATTGCC 1629 Query 62 GGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAG 121 ||||||||||| || |||||||| ||||||||||||||||| |||||||| ||||| || Sbjct 1630 GGCCGTCGCGTTCACGAAGCCTCCGGCCGCGTGTACCACACTGTCTACAACCCGCCTAAA 1689 Query 122 GTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAA 181 || | ||||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 1690 GTGGAAGGCAAGGACGATGTGACCGGCGAAGACCTGGTGCAGCGTAAAGACGACACCGAA 1749 Query 182 GAAACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTC 241 |||||||| ||||| |||||||| || |||||||| || ||||||||||||||||||||| Sbjct 1750 GAAACCGTGCGTCATCGCCTGTCGGTCTACCATTCCCAGACCAAGCCGCTGGTGGACTTC 1809 Query 242 TACCAGAAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGC 301 |||||||||||| | |||||||| |||||||| |||||||||||| || ||||||||| Sbjct 1810 TACCAGAAGCTGTCCGCTGCCCAAGGCAAGCCGAAGTACAGCCACATTCCTGGCGTTGGC 1869 Query 302 TCGGT 306 ||||| Sbjct 1870 TCGGT 1874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898008775808