Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq71344 576 3e-162 >seq71344 Length=7368 Score = 576 bits (638), Expect = 3e-162 Identities = 364/394 (92%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || || | Sbjct 1014 CGATGGTCAGCAATTCGCCGCCCACCTGAGTCCACGCCAGGCCAGTCACCTGCCCTACCT 955 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||| Sbjct 954 GATCCTGCTGCTCGGCCAGGCCATAGCGGAATTTCTTCACGCCCAGGAAGTGCTCCAGGG 895 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 | ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | Sbjct 894 AATCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGTGCATGCTCTTTGACCGCCTTAC 835 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 834 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCCCGCACACCGGCCTCGCGGGTGTAGTAGC 775 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||| |||| Sbjct 774 GCACGATATCGCGGATCGTCTCGACCTCAAATTCGATCTCGCCTTTCTTCAGGCCGTTGG 715 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 714 CCGAAATCTGCTTGGGCGCGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGT 655 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||| |||||||||||||||| |||||| Sbjct 654 AACCCGGCAGACGAATCACTTCCATCCTGTCCAG 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156865398016